Hi, I have mapped PacBio reads to a reference using minimap2 – all seems to have run ok.
When I then open the reference file (fasta or gff) and load the bam file (sorted and indexed using samtools) in Artemis I get the error message: Invalid GZIP header. I have no idea what has happened, anyone who has successfully used minimap2 (farm3) and viewed it in Artemis? Where do I start to troubleshoot? Best, Astrid
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