Follow-up Comment #5, bug #61624 (project avrdude):
Sorry, should have been clearer. You should do the following:
svn co svn://svn.savannah.nongnu.org/avrdude/branches/serialupdi/avrdude
cd avrdude
./bootstrap
./configure
make all
./avrdude -C ./avrdude.conf -p avr128db28 -b 230400 -c serialupdi -U
flash:w:flash.bin:r -U fuse0:w:0x00:m -U fuse1:w:0x00:m -U fuse5:w:0xc9:m -U
fuse6:w:0x14:m -U fuse7:w:0x00:m -U fuse8:w:0x00:m -P
/dev/tty.usbserial-AB0JSZFM
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