Committed in http://baseplugins.thep.lu.se/changeset/1188 and the plug-in wiki page is updated accordingly.
Thanks, Jari On 2/9/10 2:29 PM, Gildas Le Corguillé wrote: > Hi, > > I join you my patch for Tab2MageExporter. Is it what you expected in > your email ? > > Until now, I've never participated to an open project. Thus don't be > affraid if you see my name everywhere, it's because I wanted to sign and > assume what I changed if there were troubles with my updates. > > I might have to make modifications later (bugs) or adapt this current > script for a MAGE-TAB exporter because Tab2Mage format don't allow > pooling like Base does : > - Base : n samples in 1 sample > - Tab2Mage : n sampels in 1 extract > It will depend of my free times among my own projects. > > Excerpt from ChangeLog.txt : > > version 1.01 : 08/02/2010 - lecorguille > - Fix a problem with pooling which was not supported ... for me > - Modification : Filenames are use instead of RawBioAssays' names > for File[raw] column in the Hybridization section > - Add the possibility to have several Files[raw] per RawBioAssay (ex > : one cy3 and one cy5) > - Add a scan column in the Hybridization section > - Add a BioSourceDescription column in the Hybridization section > - Fix a problem with protocols in the Hybridization section > > > Cheers > > Gildas > > > > Le 05/02/2010 11:27, Jari Häkkinen a écrit : >> Hi Gildas, >> >> Great to see work done on the Tab2Mage exporter. The original author has >> left for other tasks and the Tab2Mage code is currently without a >> maintainer but lives under the GPL2 license so it is free to modify and >> improve. >> >> You can submit your patches to me and I make sure that they are >> committed to the repository. If you checked out the source from >> subversion then you can simply create a patch diff. Excerpt from >> http://base.thep.lu.se/wiki/DeveloperInformation: >> >> ... send an email to the developers list containing your log message and >> the output of svn diff (from the top of your Subversion working copy) ... >> >> Send the patch to me. >> >> For the new method usage we simply increase the BASE version requirement >> on the plug-in. I'll find out when the new method appeared in BASE. >> Changing the Tab2Mage plugin will not affect already installed servers >> but rather new users of the Tab2Mage plugin. Of course, users wanting to >> use your new features must of course upgrade their BASE if it is >> obsolete. >> >> >> Cheers, >> >> Jari >> >> >> On 2/5/10 10:07 AM, Gildas Le Corguillé wrote: >>> Dear colleagues, >>> >>> I had a problem with Tab2Mage exporter plugin about polling. >>> Then to know if it was my fault or its fault, I downloaded the sources >>> to study the pooling implications. >>> >>> And finally, I tried to fix what I thought be a bug. >>> >>> Now Tab2Mage_exporter : >>> - supports pooling >>> - creates a scan column in the output file >>> - uses the filemane name in the "File[raw]" column instead of the >>> RawBioAssay name >>> - supports several files per RawBioAssay >>> >>> >>> I hope I didn't add bug !? >>> And now, what is your policy about submiting an update ? Must I contact >>> the original author ? >>> >>> For the last point, I had to use the method RawBioAssay.setFileSet(). >>> Which is implement in a newer BASE2Core than Tab2Mage_exporter >>> previously used. >>> But I don't know from which version of Base, this method appear ? Then >>> if we propose my update, old version of base will show troubles. >>> >>> Thank you for your attention >>> >>> Best regards >>> >>> Gildas >>> >>> >>> >>> ------------------------------------------------------------------------------ >>> >>> The Planet: dedicated and managed hosting, cloud storage, colocation >>> Stay online with enterprise data centers and the best network in the >>> business >>> Choose flexible plans and management services without long-term >>> contracts >>> Personal 24x7 support from experience hosting pros just a phone call >>> away. >>> http://p.sf.net/sfu/theplanet-com >>> _______________________________________________ >>> basedb-devel mailing list >>> basedb-devel@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/basedb-devel >> >> ------------------------------------------------------------------------------ >> >> The Planet: dedicated and managed hosting, cloud storage, colocation >> Stay online with enterprise data centers and the best network in the >> business >> Choose flexible plans and management services without long-term contracts >> Personal 24x7 support from experience hosting pros just a phone call >> away. >> http://p.sf.net/sfu/theplanet-com >> _______________________________________________ >> basedb-devel mailing list >> basedb-devel@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/basedb-devel > > > > > ------------------------------------------------------------------------------ > The Planet: dedicated and managed hosting, cloud storage, colocation > Stay online with enterprise data centers and the best network in the business > Choose flexible plans and management services without long-term contracts > Personal 24x7 support from experience hosting pros just a phone call away. > http://p.sf.net/sfu/theplanet-com > > > > _______________________________________________ > basedb-devel mailing list > basedb-devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/basedb-devel ------------------------------------------------------------------------------ SOLARIS 10 is the OS for Data Centers - provides features such as DTrace, Predictive Self Healing and Award Winning ZFS. 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