Hi, I wonder whether anyone is working with adding support for Affymetrix BPMAP/TPMAP files used in the new Affymetrix whole-genome arrays.
This issue was addressed in ticket 150 by Henrik Bengtsson: > Just want to drop a note. We've been implementing affxparser in R based on > the Fusion SDK (currently v1.0.6). We read CDF, CEL, BPMAP/TPMAP files and > the code works on Linux, Solaris, MacOS and Windows. Fusion SDK is fast and > has a united API for reading files in ASCII, binary and the new Calvin > format. We are really happy with the reader part of the Fusion SDK API and > the feedback we get from the Affy people when we need updates. We have just > recently started to look into writing/updating Affymetrix files, and our > initial feeling is that Fusion SDK has not progressed that far when it come > to writing as for reading. I've also seen notes on Affy Devnet that they are > lagging behind in the Java version of Fusion SDK. This note was responded by Jari: > A note to Henrik Bengtsson. > > We would be interested in hearing about your experience using the Fusion SDK. > We'll make contact after the holiday season. > > Jari What was the feedback? Regards, Robin -- Robin Andersson, PhD student Linnaeus Centre for Bioinformatics BMC, Box 598, SE-751 24 Uppsala, Sweden phone: +46 18 471 66 86 (admin: 66 90) fax: +46 18 471 66 98 office: BMC, C6:315a email: [EMAIL PROTECTED] http://www.lcb.uu.se/~robina/ ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
