Hello, We have noticed that Experiment overview is very slow for large experiments (>40 raw bioassays) with many items annotated (mainly samples). I takes over a minute for some of the experiments to load overview (or re-validate). I narrowed the issue down to this line:
List<Annotation> inherited = annotationQuery.list(dc); in addAnnotations(..) method (ExperimentOverview.java). The list(dc) method takes ~200ms to complete. It is not much, but multiplied by number of items on the way from rawbioassay down to biosource (annotations are checked for each of them) and by number of rawbioassays... it causes most of the delay. Does anybody see similar problem? It is probably just a non-optimal postgres query, if experiment overview works fine on mysql dbs. Best wishes, Pawel ------------------------------------------------------------------------------ This SF.net email is sponsored by: SourcForge Community SourceForge wants to tell your story. http://p.sf.net/sfu/sf-spreadtheword _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
