Thanks! That was it. What happened was I copied those xml files to $CATALINA_HOME/webapps/www/... rather than the base install dir. I'm thinking what I was thinking is that once I had the Base2 website up, it was “installed” under tomcat, not connecting the fact that I had to go to the original installation dir to run the updatedb.sh.
Thanks again! Thomas ________________________________________ From: Nicklas Nordborg [nick...@thep.lu.se] Sent: Friday, February 11, 2011 4:09 AM To: BASE ML Subject: Re: [base] Illumina BGX reporter importer issue On 2011-02-10 21:00, Thomas Person wrote: > Howdy all, > > I have a fresh brand new a brand new installation of Base 2.16.1, on > MySQL 5.1.41, on Ubuntu 10.04.1, with Tomcat 6.0.24, and 1.6 of the > illumina plugin installed. When attempting to import the BGX file it > fails with error could not execute query on line 10 in file > 'MouseWG-6_V2_0_R0_11278593_A.bgx': Mus musculus RefS... > > I'm pretty sure I've got most everything installed and configured > properly. It seems like you are missing some required columns in the reporters table in the database. Make sure that you have done step 4 and 5 in the installation correctly: http://baseplugins.thep.lu.se/browser/plugins/base2/net.sf.basedb.illumina/tags/1.6/INSTALL /Nicklas ------------------------------------------------------------------------------ The ultimate all-in-one performance toolkit: Intel(R) Parallel Studio XE: Pinpoint memory and threading errors before they happen. Find and fix more than 250 security defects in the development cycle. Locate bottlenecks in serial and parallel code that limit performance. http://p.sf.net/sfu/intel-dev2devfeb _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net ________________________________ UT Southwestern Medical Center The future of medicine, today. ------------------------------------------------------------------------------ The ultimate all-in-one performance toolkit: Intel(R) Parallel Studio XE: Pinpoint memory and threading errors before they happen. Find and fix more than 250 security defects in the development cycle. Locate bottlenecks in serial and parallel code that limit performance. http://p.sf.net/sfu/intel-dev2devfeb _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
