On Tue, 06 Oct 2009 13:33:27 +1000, Dave Tang <d.t...@imb.uq.edu.au> wrote:
On Tue, 06 Oct 2009 12:11:47 +1000, Jyoti <jcutiep...@gmail.com> wrote:
Hello,
Hello Jyoti,
Can anyone help me to know how to make a script which can take any
sequences
by user as user input and give blast results as user output. This should
work in a server.
Any sequences can be any protein sequences in Fasta format. And Blast
is a
NCBI Blast main page which will be used and user should get the same
results
when he runs my server.
You could write your own cgi scripts or use the wwwblast package
provided by NCBI (which does exactly what you want) at:
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/
Download the appropriate netblast-2.2.21 for your operating system and
architecture.
Whoops I mean wwwblast-2.2.21.
You can then have a look at the html files and cgi scripts to see how it
is done.
Any Bioinformatician can understand my problem. Else if anyone can just
give
me idea on how to give user input and get specific results accordingly..
Will be very helpful.
Just a note, most people here on this list are Perl experts (not
bioinformaticians) so they will have no idea what Blast is or how a
fasta file is formatted. If you want your question answered by the Perl
experts you probably want to explain your problem in more general terms
and elaborate.
Thanks in Advance.
Kind Regards,
Jyo
Hope that helps,
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