On 11.01.2012, at 09:46, Janosch Linkersdörfer wrote:

> Hi Christiaan,
> 
> thanks for your answer.
> 
>> 
>> And when you look in the file, do you see lines of the form 
>> \bibcite{key}{number} or \citation{key}, and do the keys correspond with 
>> cite keys in your .bib file?
> 
> No, in my aux file, I have only entries like this:
> 
> \@writefile{toc}{\defcounter {refsection}{0}\relax 
> }\@writefile{toc}{\contentsline {section}{Introduction}{1}}
> \abx@aux@page{1}{1}
> <snip>
> \abx@aux@page{34}{5}
> ...
> 
> 
> What could be the reason for that? I´m using TeXShop with latexmk.

Do you happen to use biber with biblatex? If so, the citation information is 
not written in the .aux file but in a .bcf file. Therefore the .aux file is 
useless here and AFAIK BibDesk doesn't know anything about .bcf files (as a 
general rule: although BibDesk works with biblatex, unfortunately, no 
biblatex-specific additions are actively supported ATM).

Simon

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