Hello. If you pass an instance of NexusFileBuilder to the NexusFileFormat parse methods, it will construct a NexusFile instance in memory which you can get by calling getNexusFile() after parsing has finished.
You can then iterate over the blocks of the NexusFile by using the blockIterator() method. Each block returned is a class that implements the NexusObject interface. You can find out which type of block it is using instanceof, and thus find the DataBlock instance. You can then cast to DataBlock (which extends CharactersBlock) and use the methods from that to explore the alignment. cheers, Richard 2008/7/17 Anisah Ghoorah <[EMAIL PROTECTED]>: > > > > Hi, > > I would like to parse a nexus file and get the alignment > from the DATA block. I'm not sure how the NexusFileListener works. Is > there any code available that illustrates how to parse a nexus file. > > Many thanks, > Anisah > _________________________________________________________________ > The John Lewis Clearance - save up to 50% with FREE delivery > http://clk.atdmt.com/UKM/go/101719806/direct/01/ > _______________________________________________ > Biojava-l mailing list - Biojava-l@lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - Biojava-l@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/biojava-l
