Dear Zhiyi, I think that sortwater (http://www.ccp4.ac.uk/html/sortwater.html), will do something along what you want. Remember to read the documentation ;-)
Best regards, Folmer 2012/7/30 Zhiyi Wei <ustcwebri...@gmail.com> > Dear all, > > I have a refine structure with 8 ncs copies and several hundreds of > water molecules (which was put in one chain). Now I try to separate > these molecules by renaming to the chain id of each adjacent protein > molecule. I know RCSB can do this during deposition process. Do anyone > know a program can do a similar task? Many thanks! > > Best, > Zhiyi > -- Folmer Fredslund