Hmm. Maybe I'm doing something very wrong, because I get the following when I try those binaries:
dyld: Library not loaded: /usr/local/gfortran/lib/libgfortran.3.dylib Referenced from: /Users/brooks/Downloads/usf_osx_bin/./moleman2 Reason: no suitable image found. Did find: /usr/local/gfortran/lib/libgfortran.3.dylib: mach-o, but wrong architecture Trace/BPT trap: 5 What's that due to? (Stuff seems to break easily nowadays on Macs- perhaps I'm just not as up to speed on libraries, architectures and compilers on Apples as I need to be.) Yamei, I compiled it from source and put a copy here: https://dl.dropboxusercontent.com/u/30290835/bin/moleman2 Download it, then make it executable, & run it as follows: chmod a+x ~/Downloads/moleman2 ~/Downloads/moleman2 I hope this helps. Mark P.S. if I run this lipo -info /usr/local/lib/libgfortran.3.dylib it gives: Non-fat file: /usr/local/gfortran/lib/libgfortran.3.dylib is architecture: x86_64 x86_64 is the correct architecture, isn't it? On 24 July 2014 13:45, Harry Powell <ha...@mrc-lmb.cam.ac.uk> wrote: > Hi Mark > > Unless you've done something very odd, Snow Leopard binaries should be > compatible with Mavericks (and Yosemite, too, when you get to try that). > > Harry > -- > ** note change of address ** > Dr Harry Powell, MRC Laboratory of Molecular Biology, Francis Crick > Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH > Chairman of European Crystallographic Association SIG9 (Crystallographic > Computing) > > On 24 Jul 2014, at 13:39, Mark Brooks <mark.x.bro...@gmail.com> wrote: > > Hi Yamei, > If you're on OS X version 10.9.3, then I guess you're on > Mavericks, not Snow Leopard ( https://www.apple.com/uk/osx/ ). > > Therefore, I guess you will need to download the source code and recompile > it, since I don't know that Snow Leopard binaries are compatible with > Mavericks. (Probably not, judging from all the re-compiling that I seem to > have done recently). (Does anyone know better?) > > See below for instructions from http://xray.bmc.uu.se/usf/ for > recompiling, although under OS X 10.6. > > Mark > ------------------->8--------------------------------------------- > > The distribution kit can be found here : Distribution_kit > <http://xray.bmc.uu.se/markh/usf/usf_download.php?file=/markh/usf/usf_distribution_kit.tar.gz> > Organisation > of the distribution kit35 programs are available, and each has its own > directory with the same name as the program, under the parent directory > 'usf'. In the top-level 'usf' directory there is a shell script called > 'make_all.csh', and big surprise, if you execute that file it will will > build all the programs, leaving executables in both the programs' own > subdirectories and also in the collective directory 'usf/bin'. > Building under OS XThe package has been built under Mac OS X v10.6 using > the gfortran compiler. The kit is reported to work under 10.7 Lion, but > Xcode 4.1 needs to be installed. > Thanks to Jacques-Philippe Colletier for the Lion executables. > > In order to build yourself you will need to install XCODE which can be > downloaded from http://developer.apple.com/technology/xcode.html, and > gfortran which can be found here > http://www.macresearch.org/gfortran-leopard. You will also find a > gfortran dmg file in the distribution. > Follow the instructions that come with these installation packages. > To be able to download these packages, you will have to register as an > Apple Developer. > Then type "make_all.csh" in the downloaded USF directory. > > > > > On 24 July 2014 06:19, Yamei Yu <ymyux...@gmail.com> wrote: > >> Hi all, >> >> I’m trying to install a copy of moleman2 for my new Mac. (the version is >> 10.9.3). while I copy the osx_moleman2 from xutil directory I got the >> following message: The Finder can’t complete the operation because some >> data in “osx_moleman2” can’t be read or written. >> (Error code -36) >> Could you tell me how to solve this problem? >> Thank you so much! >> Best wishes! >> >> yamei >> >> ************************************************ >> >> Yamei Yu >> State Key Laboratory of Biotherapy／Collaborative Innovation >> Center of Biotherapy, >> West China Hospital, >> Sichuan University,Chengdu,610041, P.R.China >> Tel: 15882013485 >> Email: ymyux...@gmail.com >> ymyux...@163.com >> yamei...@scu.edu.cn >> >> >
