Hi:  this must be an old problem but I would like to know if there are other 
ideas to make things easier.

I solved a structure that contains 240 helices of identical sequences in the 
asymmetric unit.  Handling so many chains is really a headache as pdb contains 
only a single column for chain ID (currently support up to 61 chains).  I had 
to combine some (say a tetramer) as a single chain for a trick, which made me 
use just enough letters/numbers (A-Z,1-9,a-z).  However this will need further 
manual dealing with OXTs (currently I cheat with single N of a residue) and 
raise new problems (like restraints).  Some softwares does even not recognize 
chain IDs like a-z.  SegID might be another trick however nowadays many 
softwares won't take that part, so a down-to-chain rigid body / TLS refinement 
could be impossible, without the combination trick.

With tricks I am ok to make things going?  But is there a solution really solve 
the many-chain problem with PDB?

Best,

Lijun



Sent from my iPhone

Reply via email to