Thanks for many advices. I was not clear in the previous email. I know the close homologous protein (20% identity, total 500aa), but the fragment hits (30~40aa, identity 40~50%) are from other proteins in PDB. I am trying to see whether the fragments from non-homologous proteins may help the secondary structure prediction.
Best, Z On Wed, Dec 6, 2017 at 10:14 PM, zheng zhou <zhengzho...@gmail.com> wrote: > Dear CCP4 community, > > Sorry for the off-topic question. I am trying to design constructs for > structure studies. It only has a homolog structure in PDB with > sequence identity ~20%. When I blast against PDB sequence, there are > quite a few motif hits (30~40aa, identity 40~50%). Any prediction > tools utilize this information? > > Thanks for your advice in advance. > > Best, > > Zheng
