Try SWISS-MODEL. Sent from Jack's iPhone
On May 23, 2020, at 6:24 PM, Eugene Osipov <e.m.osi...@gmail.com> wrote: Dear Yong, you could use freely available Chimera.Use Tools->Structure Editing-> Dock prep. in order to add missing side chains to your protein. Another option - Protein preparation tool from Schrodinger Suite. However, it is non-free. сб, 23 мая 2020 г. в 21:19, Yong Tang <liutan...@gmail.com<mailto:liutan...@gmail.com>>: Dear all, is there a way to "automatically" patch up the missing atoms in the residues that otherwise are properly defined in a PDB entry. For example, an Arginine is defined as Arginine but only has the beta carbon on the side chain. In Coot I could use the Extensions/Modeling/Residues with Missing Atoms to identify these residues and then go down the list to "mutate" them one by one by hand. Is there anything more efficient? I could also use the Calculate/Mutate Residue Range but this inevitably changes the "good" residue side chains also. Any tip is much appreciated, -yong ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU Leuven O&N2 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
