Hi all,

I recently updated my ccp4 package to Program suite v8.0.002 and i have now run 
into a few issues with other programs. The issues are highlighted below...

- When i click 'Open in Coot' on any output through Phenix (so far only tested 
phenix.refine and phenix.phaser), i no longer see anything open. Nor do i see 
the "Connected to Phenix" button in the toolbar on Coot.

- The 'fetch' command in Pymol no longer works either (I have attached a 
screenshot of the error message here)

- Coot also seems to have an issue with not loading the amino acid restraints 
so when i click real-space refine, i get the error 'unable to find restraints 
for residue x,y,z'.

I feel they may be all related and my first thought is that it has something to 
do with my Python dependencies however I have no idea how to fix this or 
reinstall them.

Does anyone have an idea if they are all related? Or how i might fix this?

fyi I am using
- ccp4 program suit v8.0.002
- Coot 0.9.8.3
- Phenix-1.20.1-4487

Thanks in advance.

Dale.



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