Hi folks No doubt someone will tell me that I should be posting this on the Phenix BB, but since everyone on there reads ccp4BB as well (:-)), I’m likely to reach the right audience anyway!
Two Qs - (1) most important - scitbx.array_family seems to have disappeared (see stuff below Q2). (2) Does process_predicted_model.py (when I get it working) read the new-style PAE matrices that Sameer told us about last week? Since “upgrading” my conda env so that I am using Python 3.9, I’m getting an error with “process_predicted_model”, which is used for splitting up AlphaFold models into (cough, cough) “domains”, based on the PAE matrix. It ran before I did the move from Python 3.7.something… I had to remove and reinstall conda to upgrade because I managed to screw up the environment (and didn’t notice that the Python I was using wasnot actually the conda one…). So this is on a freshly installed conda... The error I get when trying to run process_predicted_model.py is - > [MacPro:~/icl/test] harry% python3 process_predicted_model.py > pae/AF-Q8W3K0-F1-predicted_aligned_error_v2.json > Traceback (most recent call last): > File "/Volumes/Users/harry/icl/test/process_predicted_model.py", line 14, > in <module> > from scitbx.array_family import flex > ModuleNotFoundError: No module named ‘scitbx.array_family' I’ve tried things like - conda install -c conda-forge cctbx-base which installs a load of useful stuff, but not, apparently, scitbx.array_family - > Python 3.9.12 (main, Jun 1 2022, 06:36:29) > [Clang 12.0.0 ] :: Anaconda, Inc. on darwin > Type "help", "copyright", "credits" or "license" for more information. > >>> import scitbx > >>> import scitbx.array_family > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > ModuleNotFoundError: No module named ‘scitbx.array_family' What do I need to do to get this working? Go back to Python 3.7? Harry ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/