Thank You Boaz for the suggestion. I tried as suggested in the issues tab. Hi Group:
Now I get the message that is appended. I have tried to install it from the packagemanager as well as the "download and install". CCP4i and CCP4mg are working well. Cheers Prasun Running CCP4i2 browser from: /home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2 Python 3.7.12 (default, Jan 6 2022, 21:30:12) [GCC 8.2.1 20180905 (Red Hat 8.2.1-3)] Qt version 5.15.2 Sandboxing disabled by user. Installed Qt WebEngine locales directory not found at location /home/prasunkumar/Downloads/destination/ccp4-8.0/translations/qtwebengine_locales. Trying application directory... Qt WebEngine locales directory not found at location /home/prasunkumar/Downloads/destination/ccp4-8.0/libexec/qtwebengine_locales. Trying fallback direc tory... Translations MAY NOT not be correct. Path override failed for key ui::DIR_LOCALES and path '/home/prasunkumar/.browser.py' [1210/220628.202976:WARNING:resource_bundle_qt.cpp(115)] locale_file_path.empty() for locale Installed Qt WebEngine locales directory not found at location /home/prasunkumar/Downloads/destination/ccp4-8.0/translations/qtwebengine_locales. Trying application directory... Installed Qt WebEngine locales directory not found at location /home/prasunkumar/Downloads/destination/ccp4-8.0/translations/qtwebengine_locales. Trying application directory... Qt WebEngine locales directory not found at location /home/prasunkumar/Downloads/destination/ccp4-8.0/libexec/qtwebengine_locales. Trying fallback direc tory... Translations MAY NOT not be correct. Qt WebEngine locales directory not found at location /home/prasunkumar/Downloads/destination/ccp4-8.0/libexec/qtwebengine_locales. Trying fallback direc tory... Translations MAY NOT not be correct. Path override failed for key ui::DIR_LOCALES and path '/home/prasunkumar/.QtWebEngineProcess' Path override failed for key ui::DIR_LOCALES and path '/home/prasunkumar/.QtWebEngineProcess' [1210/220628.222712:WARNING:resource_bundle_qt.cpp(115)] locale_file_path.empty() for locale [1210/220628.223233:WARNING:resource_bundle_qt.cpp(115)] locale_file_path.empty() for locale Installed Qt WebEngine locales directory not found at location /home/prasunkumar/Downloads/destination/ccp4-8.0/translations/qtwebengine_locales. Trying application directory... Qt WebEngine locales directory not found at location /home/prasunkumar/Downloads/destination/ccp4-8.0/libexec/qtwebengine_locales. Trying fallback direc tory... Translations MAY NOT not be correct. Path override failed for key ui::DIR_LOCALES and path '/home/prasunkumar/.QtWebEngineProcess' [1210/220628.316351:WARNING:resource_bundle_qt.cpp(115)] locale_file_path.empty() for locale ccp4i2 version 1.1.0 ccp4i2 source revision 6539 CPrintHandler saving print output to directory: /home/prasunkumar/.CCP4I2/logs/started_1670709988 None None Starting Project Manager Current schema version: ('0.1.22', '23-09-2016') CCP4i2 opening database file /home/prasunkumar/.CCP4I2/db/database.sqlite updateDbSchema 0.1.22 23-09-2016 Starting Project Manager - DONE Starting Job Controller Starting Job Controller - DONE Traceback (most recent call last): File "/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/bin/browser.py", line 109, in <module> startBrowser(sys.argv[1:], app=app, splash=splash) File "/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/utils/startup.py", line 248, in startBrowser createMissingDATABASEdbXML() File "/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/utils/startup.py", line 177, in createMissingDATABASEdbXML tree = parse_from_unicode(s) File "/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/utils/startup.py", line 173, in parse_from_unicode return etree.fromstring(s, parser=utf8_parser) File "src/lxml/etree.pyx", line 3211, in lxml.etree.fromstring File "src/lxml/parser.pxi", line 1877, in lxml.etree._parseMemoryDocument File "src/lxml/parser.pxi", line 1765, in lxml.etree._parseDoc File "src/lxml/parser.pxi", line 1127, in lxml.etree._BaseParser._parseDoc File "src/lxml/parser.pxi", line 601, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 711, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 640, in lxml.etree._raiseParseError File "<string>", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 ________________________________ From: Boaz Shaanan <bshaa...@bgu.ac.il> Sent: 10 December 2022 19:53 To: Prasun Kumar <prasun.ku...@bristol.ac.uk> Cc: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] issue with running ccp4i2 Hi, Did you check the 'issues tab' on the ccp4 site? It lists remedies for ccp4i2 on various systems. It worked for me. Cheers, Boaz Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben Gurion University Beer Sheva, Israel On Dec 10, 2022 21:32, Prasun Kumar <prasun.ku...@bristol.ac.uk> wrote: Hi Group I currently updated my ccp4 to the latest version. I have also made python3.7 the default version. The log when I run ccp4i2 & from the command line is appended below. I suspect it is the python version but please guide me for the same. Python 3.7.12 (default, Jan 6 2022, 21:30:12) [GCC 8.2.1 20180905 (Red Hat 8.2.1-3)] Qt version 5.15.2 qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "/home/prasunkumar/Desktop/crystallography/ccp4-8.0.006-shelx-arpwarp-linux64/ccp4-8.0/QtP lugins/" even though it was found. This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem. Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, offscreen, vnc, webgl, xcb. [1]+ Aborted (core dumped) ccp4i2 Cheers PK ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/