Thanks Pavel! I tried, choosing Fobs and sigmaF as input variables, but sadly it returned an error message (see below). I don’t know if anything can be done to adapt the mtz file to their server. So I emailed them and will share if I get some feedback.
> On Jan 26, 2024, at 2:45 PM, Pavel Afonine <pafon...@gmail.com> wrote: > > Hello Jan, > you can convert your cryo-EM problem into crystallographic one by FT'ing your > map into a set of structure factors "Fobs" and then giving the atomic model > and MTZ with these "Fobs" to CheckMyBlob. If it's cool enough, it should not > make much difference if your "Fobs" come from X-ray or cryo-EM! > Please share your experience if you choose to give it a try. > Good luck! > Pavel > > P.S.: Phenix way to convert map to structure factors (example): > phenix.map_to_structure_factors map.mrc d_min=2.3 > > > On Fri, Jan 26, 2024 at 10:27 AM Jan van Agthoven <janc...@gmail.com > <mailto:janc...@gmail.com>> wrote: > Dear all, > > We’re working on an unknown ligand density in our CryoEM structure. Is there > a program that uses deep-learning to fill uncharacterized electron density > similar to Checkmyblob but for CryoEM maps? > > Thanks, > > Jan > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB > <http://www.jiscmail.ac.uk/CCP4BB>, a mailing list hosted by > www.jiscmail.ac.uk <http://www.jiscmail.ac.uk/>, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > <https://www.jiscmail.ac.uk/policyandsecurity/> ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
