Miguel Ortiz Lombardia wrote:
Dear Paul and Bill,
rev 2310 from fink works properly now on mac (intel) os 10.5.8
Thank you a lot for solving this problem so quickly (and heroically)!
Some issues, then.
When launching coot I get this error:
INFO:: loading preferences file
/Users/mol/.coot-preferences/coot_toolbuttons.py
Running python script /Users/mol/.coot-preferences/coot_toolbuttons.py
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/mol/.coot-preferences/coot_toolbuttons.py", line 1, in
<module>
coot_toolbar_button("Side-by-side/Mono",
"side_by_side_stereo_mono_toggle()", "stereo-view.svg")
NameError: name 'coot_toolbar_button' is not defined
Oh dear..
and yes, my side-by-side/Mono button is gone
Due to above I guess.
Then, a debug warning, I put it here in case it may ring a bell
somewhere:
load "extensions.scm"
DEBUG:: in safe_python_command_with_return() pValue is 0x162f52c
DEBUG:: in safe_python_command_with_return() pValue is 0x162f52c
DEBUG:: in safe_python_command_with_return() pValue is 0x162f52c
DEBUG:: in safe_python_command_with_return() pValue is 0x162f52c
INFO:: loading preferences file
/Users/mol/.coot-preferences/coot-preferences.scm
Agreed, debug be gone.
Other issues:
* Residue Info window is not updated when ab alt-conformation is added
Fair enough. For 0.6.1
* If an alt-conf is added and then an auto-fit-rotamer, the
occupancies get mangled (for a two-conf case, one goes to 0.0
occupancy and the other to 1.0)
Confirmed. That's a baddie! - Thanks.
* The labels 'Maximum' and 'minimum distance to protein atoms' in the
'Find waters' dialog are swapped. Or, at least, Minimum is set to 3.40
and maximum to 2.20, which makes no sense to me (but see the neuronal
awakeness alert above)
Shock again! Yes, confirmed. I've had a setting in my .coot file for
years, so I've not noticed this.
And a good thing found in this version: bond parameters preferences
(width) is now taken into account!!!
OK. good.
Thanks for the feedback.
