Phil Evans wrote:
How does the Extensions->Dock sequence command work?
I've got a polyAla model, so I open the dialog, import a sequence file, click the "Sequence
closest fragment" or "Sequence all fragments!"
Then I get in the terminal window something like
Sequence: ??QKDIGVKPEFSFN??
Confidence: 0.508934
From : LQQKDIGVKPEFSFNIP
Chain id: 0 Offset: 114
but nothing seems to have happened.
has it failed? or worked?
OK, well that interface could do with improving. As could the
documentation - thanks for prodding me.
It has failed. It needs 0.9 or greater confidence before it will add
the sidechains (this basically Kevin's buccaneer code).
Paul.
