On 26/05/10 16:01, Scott Classen wrote:
If I inspect the residue by looking at residue info I see that the atom names now have * instead of ' and the phosphate oxygens are O1P O2P instead of OP1 OP2.
You are right of course, I'd forgotten how much Coot munges it into to make it match the dictionary.
On 02/06/10 20:23, Scott Classen wrote:
Just to reiterate When coot (0.6.2-pre-1 Miramar (revision 2965) ) imports a DNA with PDB v3 atom/residue names it converts them to v2 atom/residue names... except for the C7 of Thymidine which remains C7 instead of being renamed C5M.
Yes indeed - this was mentioned a short while ago on the Phenix list. I think I'll add a temporary fix to do this renaming.
The right way (as Phenix does it, I believe) is to the fix the dictionary to match the model, not the other way round.
Paul.
