Dear Christian, What is the version of Coot, and how did you install it?
Best regards, Keitaro On Wed, 22 Nov 2023 at 19:02, Christian Roth <christianroth...@gmail.com> wrote: > > Hi, > I have a sugar ligand with a Sia linked alpha 23 to Gal. Refinement with > Refmac of phenix works and the link is recognized from the monomer > dictionary. After opening in Coot all intersugarbonds/links are shown > properly. Realspace refinement works for the other bonds, but the Sia Gal > bond gets broken and the SIA is pushed away. The distance increases to about > 3Ang. Looks like they are treated as not connected and this is the antibump > distance? > Taken into account that this is a standard link from the monomer library I > would have suspected Coot recognizes that link automatically. What is the > source for that behaviour and do I need to supply an additional dictionary > for this link? > > Thanks and Best > Christian > > ________________________________ > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
