My thinking was that the DASWiki approach could also support the DAS writeback extension.
On 29 October 2010 11:58, Gustavo Adolfo Salazar Orejuela <gsala...@cs.uct.ac.za> wrote: > Hello There, > > I have been working in an extension to DAS1.6 called > writeback(http://www.biodas.org/wiki/DAS1.6E#DAS_writeback), this will allow > to create new versions of an existing feature. So, putting new notes into a > feature is just a creation of a new version of the feature. The server > implementation of the writeback extends MyDas > (http://code.google.com/p/mydas/) and you can get a mydas+writebackk > datasource by SVN (https://mydas.googlecode.com/svn/writeback-datasource). > We are close to release the plugin for Dasty3 to use the writeback server, > however this first client is a protein client, and so far there is not a > development for a genome client with DAS writeback capability, but I am > quite interested in this. > I hope to be able to announce the release of the writeback client in Dasty3 > in a few days, so you will be able to see it working and see if this > approach goes in the same direction of what you are looking for. > > Regards, > > Gustavo. > > 2010/10/29 Dan Bolser <dan.bol...@gmail.com> >> >> Hi Bob, >> >> This is a nice idea. In my spare time I've been working on running a >> DAS server from a MediaWiki data source. (MediaWiki is the wiki that >> runs Wikipedia). >> >> In theory, you could have a comments track that was pulled in from the >> 'DASWiki', and clicking the details link would take you to the wiki >> page to edit the comment. Going back to the GBrowse, you would then >> see the updated data from the wiki page. It wouldn't be too hard to >> have a similar workflow for adding new comments. >> >> I saw a talk from some people at KeyGene who are doing something >> similar (loading DAS into a wiki and linking it to GBrowse to generate >> query reports for specific regions). You can see the talk here: >> >> SMWCon Fall 2010 / Sunday / Rudi van Bavel >> * http://semantic-mediawiki.org/wiki/SMWCon_Fall_2010#Program >> ** https://docs.google.com/present/view?id=dg56kh6m_344gh2dg72g >> ** >> http://srv-hrl-32.web.pwo.ou.nl//informatica/SMWCon/Van%20Bavel%20bulk%20loading.wmv >> >> >> If anyone wants to take what I have done so far, my (sadly neglected) >> prototype is here: >> >> http://das.referata.com/wiki/Main_Page >> >> >> Kick me a few times and I'll get the underlying code into shape. A >> year or two back I did have a working prototype based on a MediaWiki >> ProServer adaptor. >> >> >> If you are interested in community annotation should think about attending >> this: >> >> Joint NETTAB 2010 and BBCC 2010 workshops focused on Biological Wikis: >> http://www.nettab.org/2010/ >> >> >> Cheers, >> Dan. >> >> On 26 October 2010 20:31, Bob Muller <bmul...@stanford.edu> wrote: >> > We are working with a small research project that doesn't have funds for >> > a full-scale database for features, so they want to know: >> > >> > How difficult would it be to add a comment section editable by users to >> > gbrowse? When you click on a feature in gbrowse it shows a detail page for >> > that feature, is there any way we could enable edits that could be written >> > back to the underlying mysql database that gbrowse runs on? >> > >> > Their idea is to use the SeqFeature::Store database to hold "comments" >> > entered through GBrowse as a way to annotate their genome. I'd be >> > interested >> > in whether this is possible in GBrowse 1.7 or in 2.x. >> > >> > --Bob Muller, TAIR (www.arabidopsis.org) >> > >> > >> > ------------------------------------------------------------------------------ >> > Nokia and AT&T present the 2010 Calling All Innovators-North America >> > contest >> > Create new apps & games for the Nokia N8 for consumers in U.S. and >> > Canada >> > $10 million total in prizes - $4M cash, 500 devices, nearly $6M in >> > marketing >> > Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store >> > http://p.sf.net/sfu/nokia-dev2dev >> > _______________________________________________ >> > Gmod-gbrowse mailing list >> > gmod-gbro...@lists.sourceforge.net >> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >> > >> >> _______________________________________________ >> DAS mailing list >> DAS@lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/das > > > > -- > Gustavo Adolfo Salazar Orejuela > _______________________________________________ DAS mailing list DAS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/das