Package: dialign-t Version: 1.0.2-5 Usertags: goto-cc During a rebuild of all packages in a clean sid chroot (and cowbuilder+pbuilder) the build failed with the following error. Please note that we use our research compiler tool-chain (using tools from the cbmc package), which permits extended reporting on type inconsistencies at link time.
http://sources.debian.net/src/dialign-t/1.0.2-5/ [...] gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm -Wl,-z,relro error: conflicting function declarations "simple_aligner" old definition in module museq file museq.c line 56 signed int (struct seq_col *, struct diag_col *, struct scr_matrix *, struct prob_dist *, struct alignment *, signed int) new definition in module assemble file assemble.c line 398 char (struct seq_col *scol, struct diag_col *dcol, struct scr_matrix *smatrix, struct prob_dist *pdist, struct alignment *algn, signed int round) The inconsistent return types will result in wrong interpretation of numeric values, with possibly even worse results on big-endian systems. Best, Michael
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