Source: biojava4-live
Version: 4.1.0+dfsg-1
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
Thanks for looking at #795685 so quickly. However, biojava4-live still
fails to build from source on unstable/amd64 with a different issue:
[..]
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-structure-gui/classes
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/build.xml:76:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 130 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-structure-gui/classes
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:60:
error: unmappable character for encoding ASCII
[javac] 4F88 ??? local C8
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:60:
error: unmappable character for encoding ASCII
[javac] 4F88 ??? local C8
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:60:
error: unmappable character for encoding ASCII
[javac] 4F88 ??? local C8
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:61:
error: unmappable character for encoding ASCII
[javac] 1LTI ??? local C5
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:61:
error: unmappable character for encoding ASCII
[javac] 1LTI ??? local C5
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:61:
error: unmappable character for encoding ASCII
[javac] 1LTI ??? local C5
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:62:
error: unmappable character for encoding ASCII
[javac] 2W6E ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:62:
error: unmappable character for encoding ASCII
[javac] 2W6E ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:62:
error: unmappable character for encoding ASCII
[javac] 2W6E ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:63:
error: unmappable character for encoding ASCII
[javac] 2LXC ??? local C2
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:63:
error: unmappable character for encoding ASCII
[javac] 2LXC ??? local C2
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:63:
error: unmappable character for encoding ASCII
[javac] 2LXC ??? local C2
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:64:
error: unmappable character for encoding ASCII
[javac] 3OE7 ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:64:
error: unmappable character for encoding ASCII
[javac] 3OE7 ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:64:
error: unmappable character for encoding ASCII
[javac] 3OE7 ??? local C3
[javac] ^
[javac] 15 errors
BUILD FAILED
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/build.xml:76:
Compile failed; see the compiler error output for details.
Total time: 6 seconds
debian/rules:32: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 1
make[1]: Leaving directory '/tmp/buildd/biojava4-live-4.1.0+dfsg'
debian/rules:10: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[..]
The full build log is attached or can be viewed here:
https://reproducible.debian.net/logs/unstable/amd64/biojava4-live_4.1.0+dfsg-1.build1.log.gz
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Aug 12 22:53:15 GMT+12 2015
I: pbuilder-time-stamp: 1439463195
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: creating local configuration
I: copying local configuration
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /dev/shm
I: Mounting /sys
I: policy-rc.d already exists
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 9), ant, libcommons-dbcp-java (>= 1.1), libhsqldb-java,
libcommons-collections3-java, libcommons-pool-java (>= 1.1),
libcommons-logging-java, libcommons-math-java, libcommons-cli-java,
libguava-java (>= 17.0), libcommons-codec-java, libitext5-java (>= 5.4.1),
libjmol-java, default-jdk (>= 1:1.6), junit4, javahelper (>= 0.25),
ant-optional, icedtea-netx, libhamcrest-java, libjson-simple-java (>= 1.1.1),
liblog4j2-java, libslf4j-java, libxmlunit-java
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 20247 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring
anyway as you requested:
pbuilder-satisfydepends-dummy depends on ant; however:
Package ant is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-dbcp-java (>= 1.1);
however:
Package libcommons-dbcp-java is not installed.
pbuilder-satisfydepends-dummy depends on libhsqldb-java; however:
Package libhsqldb-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-collections3-java; however:
Package libcommons-collections3-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-pool-java (>= 1.1);
however:
Package libcommons-pool-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-logging-java; however:
Package libcommons-logging-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-math-java; however:
Package libcommons-math-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-cli-java; however:
Package
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
The following NEW packages will be installed:
adwaita-icon-theme{a} ant{a} ant-optional{a} ca-certificates{a}
ca-certificates-java{a} dconf-gsettings-backend{a} dconf-service{a}
dctrl-tools{a} default-jdk{a} default-jre{a} default-jre-headless{a}
devscripts{a} dh-python{a} fontconfig{a} fontconfig-config{a}
fonts-dejavu-core{a} glib-networking{a} glib-networking-common{a}
glib-networking-services{a} gsettings-desktop-schemas{a}
hicolor-icon-theme{a} icedtea-netx{a} icedtea-netx-common{a}
java-common{a} javahelper{a} junit{a} junit4{a} libapache-pom-java{a}
libasound2{a} libasound2-data{a} libasyncns0{a}
libatinject-jsr330-api-java{a} libatk-bridge2.0-0{a}
libatk-wrapper-java{a} libatk-wrapper-java-jni{a} libatk1.0-0{a}
libatk1.0-data{a} libatspi2.0-0{a} libavahi-client3{a}
libavahi-common-data{a} libavahi-common3{a} libcairo-gobject2{a}
libcairo2{a} libcolord2{a} libcommons-cli-java{a}
libcommons-codec-java{a} libcommons-collections3-java{a}
libcommons-dbcp-java{a} libcommons-lang-java{a}
libcommons-logging-java{a} libcommons-math-java{a}
libcommons-parent-java{a} libcommons-pool-java{a} libcups2{a}
libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdrm2{a} libegl1-mesa{a}
libepoxy0{a} libexpat1{a} libflac8{a} libfontconfig1{a} libfontenc1{a}
libfreetype6{a} libgbm1{a} libgdk-pixbuf2.0-0{a}
libgdk-pixbuf2.0-common{a} libgif4{a} libgl1-mesa-glx{a} libglapi-mesa{a}
libgnutls-deb0-28{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0{a}
libgtk-3-bin{a} libgtk-3-common{a} libgtk2.0-0{a} libgtk2.0-common{a}
libguava-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhogweed4{a}
libhsqldb-java{a} libice6{a} libitext5-java{a} libjasper1{a}
libjaxp1.3-java{a} libjbig0{a} libjmol-java{a} libjpeg62-turbo{a}
libjson-c2{a} libjson-glib-1.0-0{a} libjson-glib-1.0-common{a}
libjson-simple-java{a} libjsr305-java{a} libk5crypto3{a} libkeyutils1{a}
libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblog4j2-java{a}
libmpdec2{a} libnettle6{a} libnspr4{a} libnss3{a} libogg0{a}
libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a}
libpangoft2-1.0-0{a} libpcsclite1{a} libpixman-1-0{a} libpng12-0{a}
libproxy1v5{a} libpulse0{a} libpython3-stdlib{a} libpython3.4-minimal{a}
libpython3.4-stdlib{a} librest-0.7-0{a} librsvg2-2{a} librsvg2-common{a}
libservlet2.5-java{a} libslf4j-java{a} libsm6{a} libsndfile1{a}
libsoup-gnome2.4-1{a} libsoup2.4-1{a} libssl1.0.0{a} libtasn1-6{a}
libthai-data{a} libthai0{a} libtiff5{a} libvorbis0a{a} libvorbisenc2{a}
libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1-mesa{a}
libwayland-server0{a} libwrap0{a} libx11-6{a} libx11-data{a}
libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a}
libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shape0{a}
libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a}
libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a}
libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon0{a}
libxmlunit-java{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a}
libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxv1{a}
libxxf86dga1{a} libxxf86vm1{a} mime-support{a} openjdk-7-jdk{a}
openjdk-7-jre{a} openjdk-7-jre-headless{a} openssl{a} python3{a}
python3-minimal{a} python3.4{a} python3.4-minimal{a} shared-mime-info{a}
tzdata-java{a} ucf{a} x11-common{a} x11-utils{a} xkb-data{a}
0 packages upgraded, 192 newly installed, 0 to remove and 0 not upgraded.
Need to get 137 MB of archives. After unpacking 312 MB will be used.
Writing extended state information...
Get: 1 http://ftp.de.debian.org/debian/ unstable/main libjson-c2 amd64 0.11-4
[24.8 kB]
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1.5.9-5+b1 [12.0 kB]
Get: 3 http://ftp.de.debian.org/debian/ unstable/main libwrap0 amd64 7.6.q-25
[58.5 kB]
Get: 4 http://ftp.de.debian.org/debian/ unstable/main libexpat1 amd64 2.1.0-7
[80.0 kB]
Get: 5 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 amd64
1.2.50-2+b2 [172 kB]
Get: 6 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 amd64
2.5.2-4 [466 kB]
Get: 7 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0030 [69.7 kB]
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2.11.0-6.3 [329 kB]
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[12.5 kB]
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amd64 0.6.31-5 [98.6 kB]
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0.6.31-5 [51.1 kB]
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1.8.20-1 [170 kB]
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0.6.31-5 [54.4 kB]
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2.6-3+b3 [141 kB]
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1.2.1-1+b2 [229 kB]
Get: 19 http://ftp.de.debian.org/debian/ unstable/main libgif4 amd64 4.1.6-11
[39.8 kB]
Get: 20 http://ftp.de.debian.org/debian/ unstable/main libgraphite2-3 amd64
1.2.4-3 [57.4 kB]
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[287 kB]
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2:1.0.9-1+b1 [58.8 kB]
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1:1.4.1-1 [125 kB]
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1.900.1-debian1-2.4 [133 kB]
Get: 25 http://ftp.de.debian.org/debian/ unstable/main libmpdec2 amd64 2.4.1-1
[85.7 kB]
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[19.9 kB]
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0.1.22-2 [161 kB]
Get: 28 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 amd64 0.2.9-2
[34.6 kB]
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[47.3 kB]
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1.36.8-3 [291 kB]
Get: 31 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 amd64
0.32.6-3 [507 kB]
Get: 32 http://ftp.de.debian.org/debian/ unstable/main libxau6 amd64 1:1.0.8-1
[20.7 kB]
Get: 33 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 amd64
1:1.1.2-1 [26.3 kB]
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[44.4 kB]
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[742 kB]
Get: 37 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 amd64
1.10-3+b1 [17.5 kB]
Get: 38 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 amd64
1.10-3+b1 [11.5 kB]
Get: 39 http://ftp.de.debian.org/debian/ unstable/main libxext6 amd64 2:1.3.3-1
[52.7 kB]
Get: 40 http://ftp.de.debian.org/debian/ unstable/main libxrender1 amd64
1:0.9.8-1+b1 [31.4 kB]
Get: 41 http://ftp.de.debian.org/debian/ unstable/main libcairo2 amd64 1.14.2-2
[753 kB]
Get: 42 http://ftp.de.debian.org/debian/ unstable/main libharfbuzz0b amd64
1.0.1-1 [524 kB]
Get: 43 http://ftp.de.debian.org/debian/ unstable/main libpangoft2-1.0-0 amd64
1.36.8-3 [213 kB]
Get: 44 http://ftp.de.debian.org/debian/ unstable/main libpangocairo-1.0-0
amd64 1.36.8-3 [200 kB]
Get: 45 http://ftp.de.debian.org/debian/ unstable/main libssl1.0.0 amd64
1.0.2d-1 [1274 kB]
Get: 46 http://ftp.de.debian.org/debian/ unstable/main libpython3.4-minimal
amd64 3.4.3-8 [495 kB]
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[36.4 kB]
Get: 48 http://ftp.de.debian.org/debian/ unstable/main libpython3.4-stdlib
amd64 3.4.3-8 [2057 kB]
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2:1.2.2-1+b1 [33.6 kB]
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[218 kB]
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1.3.4-2 [77.9 kB]
Get: 53 http://ftp.de.debian.org/debian/ unstable/main libsndfile1 amd64
1.0.25-9.1 [214 kB]
Get: 54 http://ftp.de.debian.org/debian/ unstable/main libx11-xcb1 amd64
2:1.6.3-1 [176 kB]
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1.10-3+b1 [12.9 kB]
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1.10-3+b1 [11.1 kB]
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1.10-3+b1 [11.1 kB]
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1.10-3+b1 [11.6 kB]
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1.10-3+b1 [14.4 kB]
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1.10-3+b1 [14.9 kB]
Get: 62 http://ftp.de.debian.org/debian/ unstable/main libxcomposite1 amd64
1:0.4.4-1 [17.4 kB]
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1:5.0.1-2+b2 [21.3 kB]
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1:1.1.14-1+b1 [35.1 kB]
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1:1.1.4-2+b1 [14.7 kB]
Get: 66 http://ftp.de.debian.org/debian/ unstable/main libxft2 amd64 2.3.2-1
[55.4 kB]
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2:1.7.4-1+b2 [79.7 kB]
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2:1.1.3-1+b1 [16.9 kB]
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1:1.1.4-1+b1 [186 kB]
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[58.6 kB]
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[23.3 kB]
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1:3.5.11-1+b1 [48.1 kB]
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1.2-1 [7836 B]
Get: 74 http://ftp.de.debian.org/debian/ unstable/main libxtst6 amd64
2:1.2.2-1+b1 [27.3 kB]
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2:1.0.10-1+b1 [24.0 kB]
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2:1.1.4-1+b1 [22.3 kB]
Get: 77 http://ftp.de.debian.org/debian/ unstable/main libxxf86vm1 amd64
1:1.1.4-1 [20.9 kB]
Get: 78 http://ftp.de.debian.org/debian/ unstable/main openssl amd64 1.0.2d-1
[695 kB]
Get: 79 http://ftp.de.debian.org/debian/ unstable/main ca-certificates all
20150426 [208 kB]
Get: 80 http://ftp.de.debian.org/debian/ unstable/main java-common all 0.52
[136 kB]
Get: 81 http://ftp.de.debian.org/debian/ unstable/main default-jre-headless
amd64 2:1.7-52 [9072 B]
Get: 82 http://ftp.de.debian.org/debian/ unstable/main libnspr4 amd64
2:4.10.8-2 [117 kB]
Get: 83 http://ftp.de.debian.org/debian/ unstable/main libnss3 amd64 2:3.19.2-1
[1139 kB]
Get: 84 http://ftp.de.debian.org/debian/ unstable/main ca-certificates-java all
20140324 [13.7 kB]
Get: 85 http://ftp.de.debian.org/debian/ unstable/main tzdata-java all 2015f-1
[79.9 kB]
Get: 86 http://ftp.de.debian.org/debian/ unstable/main libnettle6 amd64 3.1.1-4
[189 kB]
Get: 87 http://ftp.de.debian.org/debian/ unstable/main libhogweed4 amd64
3.1.1-4 [136 kB]
Get: 88 http://ftp.de.debian.org/debian/ unstable/main libp11-kit0 amd64
0.23.1-3 [112 kB]
Get: 89 http://ftp.de.debian.org/debian/ unstable/main libtasn1-6 amd64 4.5-2
[49.6 kB]
Get: 90 http://ftp.de.debian.org/debian/ unstable/main libgnutls-deb0-28 amd64
3.3.17-1 [716 kB]
Get: 91 http://ftp.de.debian.org/debian/ unstable/main libkrb5support0 amd64
1.13.2+dfsg-2 [59.8 kB]
Get: 92 http://ftp.de.debian.org/debian/ unstable/main libk5crypto3 amd64
1.13.2+dfsg-2 [115 kB]
Get: 93 http://ftp.de.debian.org/debian/ unstable/main libkrb5-3 amd64
1.13.2+dfsg-2 [308 kB]
Get: 94 http://ftp.de.debian.org/debian/ unstable/main libgssapi-krb5-2 amd64
1.13.2+dfsg-2 [152 kB]
Get: 95 http://ftp.de.debian.org/debian/ unstable/main libcups2 amd64 2.0.3-10
[296 kB]
Get: 96 http://ftp.de.debian.org/debian/ unstable/main libpcsclite1 amd64
1.8.14-1 [56.2 kB]
Get: 97 http://ftp.de.debian.org/debian/ unstable/main libpulse0 amd64 6.0-5
[262 kB]
Get: 98 http://ftp.de.debian.org/debian/ unstable/main openjdk-7-jre-headless
amd64 7u79-2.5.6-1 [39.7 MB]
Get: 99 http://ftp.de.debian.org/debian/ unstable/main python3.4-minimal amd64
3.4.3-8 [1401 kB]
Get: 100 http://ftp.de.debian.org/debian/ unstable/main python3-minimal amd64
3.4.3-4 [34.7 kB]
Get: 101 http://ftp.de.debian.org/debian/ unstable/main python3.4 amd64 3.4.3-8
[219 kB]
Get: 102 http://ftp.de.debian.org/debian/ unstable/main libpython3-stdlib amd64
3.4.3-4 [18.1 kB]
Get: 103 http://ftp.de.debian.org/debian/ unstable/main dh-python all
2.20150728 [71.3 kB]
Get: 104 http://ftp.de.debian.org/debian/ unstable/main python3 amd64 3.4.3-4
[21.1 kB]
Get: 105 http://ftp.de.debian.org/debian/ unstable/main libjbig0 amd64 2.1-3.1
[30.7 kB]
Get: 106 http://ftp.de.debian.org/debian/ unstable/main hicolor-icon-theme all
0.13-1 [8600 B]
Get: 107 http://ftp.de.debian.org/debian/ unstable/main libatk1.0-data all
2.16.0-2 [183 kB]
Get: 108 http://ftp.de.debian.org/debian/ unstable/main libatk1.0-0 amd64
2.16.0-2 [92.6 kB]
Get: 109 http://ftp.de.debian.org/debian/ unstable/main libatspi2.0-0 amd64
2.16.0-1 [60.1 kB]
Get: 110 http://ftp.de.debian.org/debian/ unstable/main libatk-bridge2.0-0
amd64 2.16.0-1 [54.9 kB]
Get: 111 http://ftp.de.debian.org/debian/ unstable/main libcairo-gobject2 amd64
1.14.2-2 [315 kB]
Get: 112 http://ftp.de.debian.org/debian/ unstable/main libepoxy0 amd64 1.2-1
[166 kB]
Get: 113 http://ftp.de.debian.org/debian/ unstable/main libtiff5 amd64 4.0.3-13
[212 kB]
Get: 114 http://ftp.de.debian.org/debian/ unstable/main libgdk-pixbuf2.0-common
all 2.31.5-1 [310 kB]
Get: 115 http://ftp.de.debian.org/debian/ unstable/main libgdk-pixbuf2.0-0
amd64 2.31.5-1 [170 kB]
Get: 116 http://ftp.de.debian.org/debian/ unstable/main libdconf1 amd64
0.24.0-2 [35.3 kB]
Get: 117 http://ftp.de.debian.org/debian/ unstable/main dconf-service amd64
0.24.0-2 [41.8 kB]
Get: 118 http://ftp.de.debian.org/debian/ unstable/main dconf-gsettings-backend
amd64 0.24.0-2 [34.1 kB]
Get: 119 http://ftp.de.debian.org/debian/ unstable/main libgtk-3-common all
3.16.6-1 [6235 kB]
Get: 120 http://ftp.de.debian.org/debian/ unstable/main libjson-glib-1.0-common
all 1.0.4-1 [154 kB]
Get: 121 http://ftp.de.debian.org/debian/ unstable/main libjson-glib-1.0-0
amd64 1.0.4-1 [163 kB]
Get: 122 http://ftp.de.debian.org/debian/ unstable/main libproxy1v5 amd64
0.4.11-4.2 [53.7 kB]
Get: 123 http://ftp.de.debian.org/debian/ unstable/main glib-networking-common
all 2.44.0-2 [54.7 kB]
Get: 124 http://ftp.de.debian.org/debian/ unstable/main
glib-networking-services amd64 2.44.0-2+b1 [18.6 kB]
Get: 125 http://ftp.de.debian.org/debian/ unstable/main
gsettings-desktop-schemas all 3.16.1-1 [428 kB]
Get: 126 http://ftp.de.debian.org/debian/ unstable/main glib-networking amd64
2.44.0-2+b1 [53.9 kB]
Get: 127 http://ftp.de.debian.org/debian/ unstable/main libsoup2.4-1 amd64
2.50.0-2 [274 kB]
Get: 128 http://ftp.de.debian.org/debian/ unstable/main libsoup-gnome2.4-1
amd64 2.50.0-2 [59.1 kB]
Get: 129 http://ftp.de.debian.org/debian/ unstable/main librest-0.7-0 amd64
0.7.93-1 [33.1 kB]
Get: 130 http://ftp.de.debian.org/debian/ unstable/main libwayland-client0
amd64 1.8.1-1 [23.6 kB]
Get: 131 http://ftp.de.debian.org/debian/ unstable/main libwayland-cursor0
amd64 1.8.1-1 [12.8 kB]
Get: 132 http://ftp.de.debian.org/debian/ unstable/main libdrm2 amd64 2.4.62-1
[32.6 kB]
Get: 133 http://ftp.de.debian.org/debian/ unstable/main libwayland-server0
amd64 1.8.1-1 [28.6 kB]
Get: 134 http://ftp.de.debian.org/debian/ unstable/main libgbm1 amd64 10.6.3-1
[56.8 kB]
Get: 135 http://ftp.de.debian.org/debian/ unstable/main libegl1-mesa amd64
10.6.3-1 [94.1 kB]
Get: 136 http://ftp.de.debian.org/debian/ unstable/main libwayland-egl1-mesa
amd64 10.6.3-1 [39.8 kB]
Get: 137 http://ftp.de.debian.org/debian/ unstable/main xkb-data all 2.14-1
[614 kB]
Get: 138 http://ftp.de.debian.org/debian/ unstable/main libxkbcommon0 amd64
0.5.0-1 [121 kB]
Get: 139 http://ftp.de.debian.org/debian/ unstable/main libxrandr2 amd64
2:1.5.0-1 [36.0 kB]
Get: 140 http://ftp.de.debian.org/debian/ unstable/main shared-mime-info amd64
1.3-1 [634 kB]
Get: 141 http://ftp.de.debian.org/debian/ unstable/main libgtk-3-0 amd64
3.16.6-1 [5237 kB]
Get: 142 http://ftp.de.debian.org/debian/ unstable/main libgtk-3-bin amd64
3.16.6-1 [3014 kB]
Get: 143 http://ftp.de.debian.org/debian/ unstable/main librsvg2-2 amd64
2.40.10-1 [259 kB]
Get: 144 http://ftp.de.debian.org/debian/ unstable/main librsvg2-common amd64
2.40.10-1 [180 kB]
Get: 145 http://ftp.de.debian.org/debian/ unstable/main adwaita-icon-theme all
3.16.2.1-2 [10.8 MB]
Get: 146 http://ftp.de.debian.org/debian/ unstable/main ant all 1.9.6-1 [1900
kB]
Get: 147 http://ftp.de.debian.org/debian/ unstable/main ant-optional all
1.9.6-1 [328 kB]
Get: 148 http://ftp.de.debian.org/debian/ unstable/main dctrl-tools amd64
2.24-1 [143 kB]
Get: 149 http://ftp.de.debian.org/debian/ unstable/main libasound2-data all
1.0.29-1 [67.1 kB]
Get: 150 http://ftp.de.debian.org/debian/ unstable/main libasound2 amd64
1.0.29-1 [377 kB]
Get: 151 http://ftp.de.debian.org/debian/ unstable/main libgtk2.0-common all
2.24.28-1 [3140 kB]
Get: 152 http://ftp.de.debian.org/debian/ unstable/main libgtk2.0-0 amd64
2.24.28-1 [2304 kB]
Get: 153 http://ftp.de.debian.org/debian/ unstable/main libglapi-mesa amd64
10.6.3-1 [55.2 kB]
Get: 154 http://ftp.de.debian.org/debian/ unstable/main libgl1-mesa-glx amd64
10.6.3-1 [179 kB]
Get: 155 http://ftp.de.debian.org/debian/ unstable/main libfontenc1 amd64
1:1.1.3-1 [24.1 kB]
Get: 156 http://ftp.de.debian.org/debian/ unstable/main libxaw7 amd64
2:1.0.13-1 [200 kB]
Get: 157 http://ftp.de.debian.org/debian/ unstable/main x11-utils amd64 7.7+3
[193 kB]
Get: 158 http://ftp.de.debian.org/debian/ unstable/main libatk-wrapper-java all
0.33.0-2 [38.2 kB]
Get: 159 http://ftp.de.debian.org/debian/ unstable/main libatk-wrapper-java-jni
amd64 0.33.0-2 [32.4 kB]
Get: 160 http://ftp.de.debian.org/debian/ unstable/main openjdk-7-jre amd64
7u79-2.5.6-1 [175 kB]
Get: 161 http://ftp.de.debian.org/debian/ unstable/main default-jre amd64
2:1.7-52 [968 B]
Get: 162 http://ftp.de.debian.org/debian/ unstable/main openjdk-7-jdk amd64
7u79-2.5.6-1 [16.1 MB]
Get: 163 http://ftp.de.debian.org/debian/ unstable/main default-jdk amd64
2:1.7-52 [962 B]
Get: 164 http://ftp.de.debian.org/debian/ unstable/main devscripts amd64 2.15.8
[908 kB]
Get: 165 http://ftp.de.debian.org/debian/ unstable/main javahelper all 0.52
[84.4 kB]
Get: 166 http://ftp.de.debian.org/debian/ unstable/main junit all 3.8.2-8 [107
kB]
Get: 167 http://ftp.de.debian.org/debian/ unstable/main libhamcrest-java all
1.3-5 [387 kB]
Get: 168 http://ftp.de.debian.org/debian/ unstable/main junit4 all 4.12-2 [286
kB]
Get: 169 http://ftp.de.debian.org/debian/ unstable/main libapache-pom-java all
10-2 [3870 B]
Get: 170 http://ftp.de.debian.org/debian/ unstable/main
libatinject-jsr330-api-java all 1.0+ds1-1 [22.6 kB]
Get: 171 http://ftp.de.debian.org/debian/ unstable/main libcommons-parent-java
all 22-2 [6786 B]
Get: 172 http://ftp.de.debian.org/debian/ unstable/main libcommons-lang-java
all 2.6-5 [269 kB]
Get: 173 http://ftp.de.debian.org/debian/ unstable/main libcommons-cli-java all
1.3.1-2 [55.3 kB]
Get: 174 http://ftp.de.debian.org/debian/ unstable/main libcommons-codec-java
all 1.10-1 [234 kB]
Get: 175 http://ftp.de.debian.org/debian/ unstable/main
libcommons-collections3-java all 3.2.1-8 [592 kB]
Get: 176 http://ftp.de.debian.org/debian/ unstable/main libcommons-pool-java
all 1.6-2 [105 kB]
Get: 177 http://ftp.de.debian.org/debian/ unstable/main libcommons-dbcp-java
all 1.4-5 [155 kB]
Get: 178 http://ftp.de.debian.org/debian/ unstable/main libcommons-logging-java
all 1.2-1 [62.1 kB]
Get: 179 http://ftp.de.debian.org/debian/ unstable/main libcommons-math-java
all 2.2-4 [887 kB]
Get: 180 http://ftp.de.debian.org/debian/ unstable/main libjsr305-java all
0.1~+svn49-9 [26.4 kB]
Get: 181 http://ftp.de.debian.org/debian/ unstable/main libguava-java all
18.0-4 [1981 kB]
Get: 182 http://ftp.de.debian.org/debian/ unstable/main libservlet2.5-java all
6.0.41-4 [219 kB]
Get: 183 http://ftp.de.debian.org/debian/ unstable/main libhsqldb-java all
2.2.9+dfsg-4 [1405 kB]
Get: 184 http://ftp.de.debian.org/debian/ unstable/main libitext5-java all
5.5.6-1 [2154 kB]
Get: 185 http://ftp.de.debian.org/debian/ unstable/main libjaxp1.3-java all
1.3.05-2 [450 kB]
Get: 186 http://ftp.de.debian.org/debian/ unstable/main libjmol-java all
12.2.32+dfsg2-1 [8308 kB]
Get: 187 http://ftp.de.debian.org/debian/ unstable/main libslf4j-java all
1.7.12-2 [115 kB]
Get: 188 http://ftp.de.debian.org/debian/ unstable/main liblog4j2-java all
2.2-1 [943 kB]
Get: 189 http://ftp.de.debian.org/debian/ unstable/main libxmlunit-java all
1.6-1 [95.5 kB]
Get: 190 http://ftp.de.debian.org/debian/ unstable/main icedtea-netx-common all
1.5.2-1.1 [1128 kB]
Get: 191 http://ftp.de.debian.org/debian/ unstable/main icedtea-netx amd64
1.5.2-1.1 [25.0 kB]
Get: 192 http://ftp.de.debian.org/debian/ unstable/main libjson-simple-java all
1.1.1-3 [26.1 kB]
Fetched 137 MB in 6s (19.9 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libjson-c2:amd64.
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(Reading database ... 20247 files and directories currently installed.)
Preparing to unpack .../libjson-c2_0.11-4_amd64.deb ...
Unpacking libjson-c2:amd64 (0.11-4) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../libkeyutils1_1.5.9-5+b1_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.5.9-5+b1) ...
Selecting previously unselected package libwrap0:amd64.
Preparing to unpack .../libwrap0_7.6.q-25_amd64.deb ...
Unpacking libwrap0:amd64 (7.6.q-25) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.1.0-7_amd64.deb ...
Unpacking libexpat1:amd64 (2.1.0-7) ...
Selecting previously unselected package libpng12-0:amd64.
Preparing to unpack .../libpng12-0_1.2.50-2+b2_amd64.deb ...
Unpacking libpng12-0:amd64 (1.2.50-2+b2) ...
Selecting previously unselected package libfreetype6:amd64.
Preparing to unpack .../libfreetype6_2.5.2-4_amd64.deb ...
Unpacking libfreetype6:amd64 (2.5.2-4) ...
Selecting previously unselected package ucf.
Preparing to unpack .../archives/ucf_3.0030_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0030) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../fonts-dejavu-core_2.35-1_all.deb ...
Unpacking fonts-dejavu-core (2.35-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../fontconfig-config_2.11.0-6.3_all.deb ...
Unpacking fontconfig-config (2.11.0-6.3) ...
Selecting previously unselected package libfontconfig1:amd64.
Preparing to unpack .../libfontconfig1_2.11.0-6.3_amd64.deb ...
Unpacking libfontconfig1:amd64 (2.11.0-6.3) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../fontconfig_2.11.0-6.3_amd64.deb ...
Unpacking fontconfig (2.11.0-6.3) ...
Selecting previously unselected package libasyncns0:amd64.
Preparing to unpack .../libasyncns0_0.8-5_amd64.deb ...
Unpacking libasyncns0:amd64 (0.8-5) ...
Selecting previously unselected package libavahi-common-data:amd64.
Preparing to unpack .../libavahi-common-data_0.6.31-5_amd64.deb ...
Unpacking libavahi-common-data:amd64 (0.6.31-5) ...
Selecting previously unselected package libavahi-common3:amd64.
Preparing to unpack .../libavahi-common3_0.6.31-5_amd64.deb ...
Unpacking libavahi-common3:amd64 (0.6.31-5) ...
Selecting previously unselected package libdbus-1-3:amd64.
Preparing to unpack .../libdbus-1-3_1.8.20-1_amd64.deb ...
Unpacking libdbus-1-3:amd64 (1.8.20-1) ...
Selecting previously unselected package libavahi-client3:amd64.
Preparing to unpack .../libavahi-client3_0.6.31-5_amd64.deb ...
Unpacking libavahi-client3:amd64 (0.6.31-5) ...
Selecting previously unselected package liblcms2-2:amd64.
Preparing to unpack .../liblcms2-2_2.6-3+b3_amd64.deb ...
Unpacking liblcms2-2:amd64 (2.6-3+b3) ...
Selecting previously unselected package libcolord2:amd64.
Preparing to unpack .../libcolord2_1.2.1-1+b2_amd64.deb ...
Unpacking libcolord2:amd64 (1.2.1-1+b2) ...
Selecting previously unselected package libgif4:amd64.
Preparing to unpack .../libgif4_4.1.6-11_amd64.deb ...
Unpacking libgif4:amd64 (4.1.6-11) ...
Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../libgraphite2-3_1.2.4-3_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.2.4-3) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../x11-common_1%3a7.7+9_all.deb ...
Unpacking x11-common (1:7.7+9) ...
Selecting previously unselected package libice6:amd64.
Preparing to unpack .../libice6_2%3a1.0.9-1+b1_amd64.deb ...
Unpacking libice6:amd64 (2:1.0.9-1+b1) ...
Selecting previously unselected package libjpeg62-turbo:amd64.
Preparing to unpack .../libjpeg62-turbo_1%3a1.4.1-1_amd64.deb ...
Unpacking libjpeg62-turbo:amd64 (1:1.4.1-1) ...
Selecting previously unselected package libjasper1:amd64.
Preparing to unpack .../libjasper1_1.900.1-debian1-2.4_amd64.deb ...
Unpacking libjasper1:amd64 (1.900.1-debian1-2.4) ...
Selecting previously unselected package libmpdec2:amd64.
Preparing to unpack .../libmpdec2_2.4.1-1_amd64.deb ...
Unpacking libmpdec2:amd64 (2.4.1-1) ...
Selecting previously unselected package libogg0:amd64.
Preparing to unpack .../libogg0_1.3.2-1_amd64.deb ...
Unpacking libogg0:amd64 (1.3.2-1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../libthai-data_0.1.22-2_all.deb ...
Unpacking libthai-data (0.1.22-2) ...
Selecting previously unselected package libdatrie1:amd64.
Preparing to unpack .../libdatrie1_0.2.9-2_amd64.deb ...
Unpacking libdatrie1:amd64 (0.2.9-2) ...
Selecting previously unselected package libthai0:amd64.
Preparing to unpack .../libthai0_0.1.22-2_amd64.deb ...
Unpacking libthai0:amd64 (0.1.22-2) ...
Selecting previously unselected package libpango-1.0-0:amd64.
Preparing to unpack .../libpango-1.0-0_1.36.8-3_amd64.deb ...
Unpacking libpango-1.0-0:amd64 (1.36.8-3) ...
Selecting previously unselected package libpixman-1-0:amd64.
Preparing to unpack .../libpixman-1-0_0.32.6-3_amd64.deb ...
Unpacking libpixman-1-0:amd64 (0.32.6-3) ...
Selecting previously unselected package libxau6:amd64.
Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ...
Unpacking libxau6:amd64 (1:1.0.8-1) ...
Selecting previously unselected package libxdmcp6:amd64.
Preparing to unpack .../libxdmcp6_1%3a1.1.2-1_amd64.deb ...
Unpacking libxdmcp6:amd64 (1:1.1.2-1) ...
Selecting previously unselected package libxcb1:amd64.
Preparing to unpack .../libxcb1_1.10-3+b1_amd64.deb ...
Unpacking libxcb1:amd64 (1.10-3+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../libx11-data_2%3a1.6.3-1_all.deb ...
Unpacking libx11-data (2:1.6.3-1) ...
Selecting previously unselected package libx11-6:amd64.
Preparing to unpack .../libx11-6_2%3a1.6.3-1_amd64.deb ...
Unpacking libx11-6:amd64 (2:1.6.3-1) ...
Selecting previously unselected package libxcb-render0:amd64.
Preparing to unpack .../libxcb-render0_1.10-3+b1_amd64.deb ...
Unpacking libxcb-render0:amd64 (1.10-3+b1) ...
Selecting previously unselected package libxcb-shm0:amd64.
Preparing to unpack .../libxcb-shm0_1.10-3+b1_amd64.deb ...
Unpacking libxcb-shm0:amd64 (1.10-3+b1) ...
Selecting previously unselected package libxext6:amd64.
Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ...
Unpacking libxext6:amd64 (2:1.3.3-1) ...
Selecting previously unselected package libxrender1:amd64.
Preparing to unpack .../libxrender1_1%3a0.9.8-1+b1_amd64.deb ...
Unpacking libxrender1:amd64 (1:0.9.8-1+b1) ...
Selecting previously unselected package libcairo2:amd64.
Preparing to unpack .../libcairo2_1.14.2-2_amd64.deb ...
Unpacking libcairo2:amd64 (1.14.2-2) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../libharfbuzz0b_1.0.1-1_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (1.0.1-1) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../libpangoft2-1.0-0_1.36.8-3_amd64.deb ...
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update-rc.d: warning: start and stop actions are no longer supported; falling
back to defaults
[....] Setting up X socket directories... /tmp/.X11-unix
/tmp/.ICE-unix[?25l7[1G[[32m ok [39;49m8[?12l[?25h.
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Setting up libjson-glib-1.0-0:amd64 (1.0.4-1) ...
Setting up libproxy1v5:amd64 (0.4.11-4.2) ...
Setting up glib-networking-common (2.44.0-2) ...
Setting up glib-networking-services (2.44.0-2+b1) ...
Setting up gsettings-desktop-schemas (3.16.1-1) ...
Setting up glib-networking:amd64 (2.44.0-2+b1) ...
Setting up libsoup2.4-1:amd64 (2.50.0-2) ...
Setting up libsoup-gnome2.4-1:amd64 (2.50.0-2) ...
Setting up librest-0.7-0:amd64 (0.7.93-1) ...
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Setting up libgbm1:amd64 (10.6.3-1) ...
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Setting up libwayland-egl1-mesa:amd64 (10.6.3-1) ...
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Setting up libxrandr2:amd64 (2:1.5.0-1) ...
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Setting up librsvg2-common:amd64 (2.40.10-1) ...
Setting up dctrl-tools (2.24-1) ...
Setting up libasound2-data (1.0.29-1) ...
Setting up libasound2:amd64 (1.0.29-1) ...
Setting up libgtk2.0-common (2.24.28-1) ...
Setting up libgtk2.0-0:amd64 (2.24.28-1) ...
Setting up libglapi-mesa:amd64 (10.6.3-1) ...
Setting up libgl1-mesa-glx:amd64 (10.6.3-1) ...
Setting up libfontenc1:amd64 (1:1.1.3-1) ...
Setting up libxaw7:amd64 (2:1.0.13-1) ...
Setting up x11-utils (7.7+3) ...
Setting up libatk-wrapper-java (0.33.0-2) ...
Setting up junit (3.8.2-8) ...
Setting up libhamcrest-java (1.3-5) ...
Setting up libapache-pom-java (10-2) ...
Setting up libatinject-jsr330-api-java (1.0+ds1-1) ...
Setting up libcommons-parent-java (22-2) ...
Setting up libcommons-lang-java (2.6-5) ...
Setting up libcommons-cli-java (1.3.1-2) ...
Setting up libcommons-codec-java (1.10-1) ...
Setting up libcommons-collections3-java (3.2.1-8) ...
Setting up libcommons-pool-java (1.6-2) ...
Setting up libcommons-dbcp-java (1.4-5) ...
Setting up libcommons-logging-java (1.2-1) ...
Setting up libcommons-math-java (2.2-4) ...
Setting up libjsr305-java (0.1~+svn49-9) ...
Setting up libguava-java (18.0-4) ...
Setting up libservlet2.5-java (6.0.41-4) ...
Setting up libhsqldb-java (2.2.9+dfsg-4) ...
Setting up libitext5-java (5.5.6-1) ...
Setting up libjaxp1.3-java (1.3.05-2) ...
Setting up libjmol-java (12.2.32+dfsg2-1) ...
Setting up libslf4j-java (1.7.12-2) ...
Setting up liblog4j2-java (2.2-1) ...
Setting up libxmlunit-java (1.6-1) ...
Setting up icedtea-netx-common (1.5.2-1.1) ...
Setting up libjson-simple-java (1.1.1-3) ...
Setting up default-jre-headless (2:1.7-52) ...
Setting up dh-python (2.20150728) ...
Setting up python3 (3.4.3-4) ...
Setting up libgtk-3-common (3.16.6-1) ...
Setting up libgtk-3-0:amd64 (3.16.6-1) ...
Setting up ant (1.9.6-1) ...
Setting up ant-optional (1.9.6-1) ...
Setting up libatk-wrapper-java-jni:amd64 (0.33.0-2) ...
Setting up devscripts (2.15.8) ...
Setting up javahelper (0.52) ...
Setting up junit4 (4.12-2) ...
Setting up openjdk-7-jre-headless:amd64 (7u79-2.5.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmid to
provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java to
provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/keytool to
provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/pack200 to
provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using
/usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmiregistry to provide
/usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/unpack200
to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/orbd to
provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/servertool
to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/tnameserv
to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jexec to
provide /usr/bin/jexec (jexec) in auto mode
Setting up ca-certificates-java (20140324) ...
done.
Setting up libgtk-3-bin (3.16.6-1) ...
Setting up adwaita-icon-theme (3.16.2.1-2) ...
Setting up openjdk-7-jre:amd64 (7u79-2.5.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/policytool
to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (2:1.7-52) ...
Setting up openjdk-7-jdk:amd64 (7u79-2.5.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/idlj to
provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsimport to
provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/rmic to
provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jinfo to
provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jsadebugd to
provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/native2ascii
to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstat to
provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javac to
provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javah to
provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jps to provide
/usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstack to
provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jrunscript to
provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javadoc to
provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jhat to
provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javap to
provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jar to provide
/usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/extcheck to
provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/schemagen to
provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/xjc to provide
/usr/bin/xjc (xjc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jmap to
provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/appletviewer
to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jconsole to
provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstatd to
provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jdb to provide
/usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/serialver to
provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsgen to
provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jcmd to
provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jarsigner to
provide /usr/bin/jarsigner (jarsigner) in auto mode
Setting up default-jdk (2:1.7-52) ...
Setting up icedtea-netx:amd64 (1.5.2-1.1) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/javaws to
provide /usr/bin/javaws (javaws) in auto mode
update-alternatives: using
/usr/lib/jvm/java-6-openjdk-amd64/jre/bin/itweb-settings to provide
/usr/bin/itweb-settings (itweb-settings) in auto mode
update-alternatives: warning: not replacing
/usr/share/man/man1/itweb-settings.1.gz with a link
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/javaws to
provide /usr/bin/javaws (javaws) in auto mode
update-alternatives: using
/usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings to provide
/usr/bin/itweb-settings (itweb-settings) in auto mode
update-alternatives: warning: not replacing
/usr/share/man/man1/itweb-settings.1.gz with a link
Processing triggers for libc-bin (2.19-19) ...
Processing triggers for systemd (224-1) ...
Processing triggers for ca-certificates (20150426) ...
Updating certificates in /etc/ssl/certs...
180 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
Adding debian:A-Trust-nQual-03.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:AC_RaÃz_Certicámara_S.A..pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Certigna.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certum_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:ComSign_CA.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EBG_Elektronik_Sertifika_Hizmet_SaÄlayıcısı.pem
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:IGC_A.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Juur-SK.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:NetLock_Arany_=Class_Gold=_FÅtanúsÃtvány.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:PSCProcert.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:S-TRUST_Universal_Root_CA.pem
Adding debian:SG_TRUST_SERVICES_RACINE.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding
debian:TÃBÄ°TAK_UEKAE_Kök_Sertifika_Hizmet_SaÄlayıcısı_-_Sürüm_3.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:WoSign.pem
Adding debian:WoSign_China.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:spi-cacert-2008.pem
done.
done.
Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.31.5-1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Copying source file
I: copying [biojava4-live_4.1.0+dfsg-1.dsc]
I: copying [./biojava4-live_4.1.0+dfsg.orig.tar.bz2]
I: copying [./biojava4-live_4.1.0+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Aug 12 19:38:19 2015 GMT+12 using RSA key ID 326D8438
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on
./biojava4-live_4.1.0+dfsg-1.dsc
dpkg-source: info: extracting biojava4-live in biojava4-live-4.1.0+dfsg
dpkg-source: info: unpacking biojava4-live_4.1.0+dfsg.orig.tar.bz2
dpkg-source: info: unpacking biojava4-live_4.1.0+dfsg-1.debian.tar.xz
dpkg-source: info: applying fix_itext_class_updates
dpkg-source: info: applying use_simple_json
dpkg-source: info: applying fix_import
dpkg-source: info: applying faketest
dpkg-source: info: applying fix_ascii_characters_mapping
dpkg-source: info: applying skip_network_related_tests
I: Building the package
I: Running cd tmp/buildd/*/ && env
PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" dpkg-buildpackage -us -uc -b
-rfakeroot
dpkg-buildpackage: source package biojava4-live
dpkg-buildpackage: source version 4.1.0+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Olivier Sallou <osal...@debian.org>
dpkg-source --before-build biojava4-live-4.1.0+dfsg
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
dh clean --with javahelper
dh_testdir
dh_auto_clean
jh_clean
debian/rules override_dh_clean
make[1]: Entering directory '/tmp/buildd/biojava4-live-4.1.0+dfsg'
dh_clean
rm -rf build
rm -rf dist
rm -rf javadoc
rm -rf test
rm -f biojava-*/build.xml
rm -rf biojavadoc
rm -rf doc
make[1]: Leaving directory '/tmp/buildd/biojava4-live-4.1.0+dfsg'
debian/rules build
dh build --with javahelper
dh_testdir
debian/rules override_dh_auto_configure
make[1]: Entering directory '/tmp/buildd/biojava4-live-4.1.0+dfsg'
dh_auto_configure
sed -e 's/BJLIB/biojava4-forester/g' debian/build.xml >
biojava-forester/build.xml
sed -e 's/BJLIB/biojava4-aa-prop/g' debian/build.xml > biojava-aa-prop/build.xml
sed -e 's/BJLIB/biojava4-core/g' debian/build.xml > biojava-core/build.xml
sed -e 's/BJLIB/biojava4-alignment/g' debian/build.xml >
biojava-alignment/build.xml
sed -e 's/BJLIB/biojava4-genome/g' debian/build.xml > biojava-genome/build.xml
sed -e 's/BJLIB/biojava4-modfinder/g' debian/build.xml >
biojava-modfinder/build.xml
sed -e 's/BJLIB/biojava4-phylo/g' debian/build.xml > biojava-phylo/build.xml
sed -e 's/BJLIB/biojava4-sequencing/g' debian/build.xml >
biojava-sequencing/build.xml
sed -e 's/BJLIB/biojava4-protein-disorder/g' debian/build.xml >
biojava-protein-disorder/build.xml
sed -e 's/BJLIB/biojava4-structure/g' debian/build.xml >
biojava-structure/build.xml
sed -e 's/BJLIB/biojava4-ws/g' debian/build.xml > biojava-ws/build.xml
sed -e 's/BJLIB/biojava4-structure-gui/g' debian/build.xml >
biojava-structure-gui/build.xml
sed -e 's/BJLIB/biojava4-ontology/g' debian/build.xml >
biojava-ontology/build.xml
sed -e 's/BJLIB/biojava4-protein-comparison-tool/g' debian/build.xml >
biojava-protein-comparison-tool/build.xml
sed -e 's/BJLIB/biojava4-survival/g' debian/build.xml >
biojava-survival/build.xml
sed -e 's/BJLIB/biojava4-jcolorbrewer/g' debian/build.xml >
biojava-jcolorbrewer/build.xml
make[1]: Leaving directory '/tmp/buildd/biojava4-live-4.1.0+dfsg'
jh_linkjars
debian/rules override_dh_auto_build
make[1]: Entering directory '/tmp/buildd/biojava4-live-4.1.0+dfsg'
cd biojava-jcolorbrewer && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-jcolorbrewer/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-jcolorbrewer/classes
[mkdir] Created dir: /tmp/buildd/biojava4-live-4.1.0+dfsg/dist
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-jcolorbrewer/build.xml:76:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 9 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-jcolorbrewer/classes
[javac] Note:
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-jcolorbrewer/src/main/java/org/jcolorbrewer/ui/ColorPaletteChooserDialog.java
uses or overrides a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[copy] Warning:
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-jcolorbrewer/src/main/resources
does not exist.
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-jcolorbrewer.jar
BUILD SUCCESSFUL
Total time: 3 seconds
cd biojava-forester && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-forester/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-forester/classes
[javac] /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-forester/build.xml:76:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 332 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-forester/classes
[javac] Note:
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java
uses or overrides a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[copy] Warning:
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-forester/src/main/resources does
not exist.
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-forester.jar
BUILD SUCCESSFUL
Total time: 14 seconds
cd biojava-core && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-core/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-core/classes
[javac] /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-core/build.xml:76:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 140 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-core/classes
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[copy] Copying 2 files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-core/classes
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-core.jar
BUILD SUCCESSFUL
Total time: 8 seconds
cd biojava-phylo && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-phylo/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-phylo/classes
[javac] /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-phylo/build.xml:76:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 9 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-phylo/classes
[copy] Copying 2 files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-phylo/classes
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-phylo.jar
BUILD SUCCESSFUL
Total time: 4 seconds
cd biojava-alignment && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-alignment/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-alignment/classes
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-alignment/build.xml:76: warning:
'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to
false for repeatable builds
[javac] Compiling 66 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-alignment/classes
[copy] Copying 22 files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-alignment/classes
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-alignment.jar
BUILD SUCCESSFUL
Total time: 6 seconds
cd biojava-aa-prop && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-aa-prop/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-aa-prop/classes
[javac] /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-aa-prop/build.xml:76:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 32 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-aa-prop/classes
[javac] Creating empty
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-aa-prop/classes/org/biojava/nbio/aaproperties/profeat/package-info.class
[javac] Creating empty
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-aa-prop/classes/org/biojava/nbio/aaproperties/package-info.class
[javac] Creating empty
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-aa-prop/classes/org/biojava/nbio/aaproperties/xml/package-info.class
[javac] Creating empty
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-aa-prop/classes/org/biojava/nbio/aaproperties/profeat/convertor/package-info.class
[copy] Copying 11 files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-aa-prop/classes
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-aa-prop.jar
BUILD SUCCESSFUL
Total time: 5 seconds
cd biojava-genome && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-genome/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-genome/classes
[javac] /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-genome/build.xml:76:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 28 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-genome/classes
[copy] Copying 1 file to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-genome/classes
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-genome.jar
BUILD SUCCESSFUL
Total time: 5 seconds
cd biojava-sequencing && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-sequencing/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-sequencing/classes
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-sequencing/build.xml:76: warning:
'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to
false for repeatable builds
[javac] Compiling 19 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-sequencing/classes
[javac] Creating empty
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-sequencing/classes/org/biojava/nbio/sequencing/io/fastq/package-info.class
[copy] Warning:
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-sequencing/src/main/resources does
not exist.
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-sequencing.jar
BUILD SUCCESSFUL
Total time: 6 seconds
cd biojava-structure && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-structure/classes
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure/build.xml:76: warning:
'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to
false for repeatable builds
[javac] Compiling 439 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-structure/classes
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[copy] Copying 63 files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-structure/classes
jar:
[jar] Building jar:
/tmp/buildd/biojava4-live-4.1.0+dfsg/dist/biojava4-structure.jar
BUILD SUCCESSFUL
Total time: 47 seconds
cd biojava-structure-gui && ant jar
Buildfile: /tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/build.xml
compile:
[mkdir] Created dir:
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-structure-gui/classes
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/build.xml:76:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 130 source files to
/tmp/buildd/biojava4-live-4.1.0+dfsg/build/biojava4-structure-gui/classes
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:60:
error: unmappable character for encoding ASCII
[javac] 4F88 ??? local C8
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:60:
error: unmappable character for encoding ASCII
[javac] 4F88 ??? local C8
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:60:
error: unmappable character for encoding ASCII
[javac] 4F88 ??? local C8
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:61:
error: unmappable character for encoding ASCII
[javac] 1LTI ??? local C5
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:61:
error: unmappable character for encoding ASCII
[javac] 1LTI ??? local C5
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:61:
error: unmappable character for encoding ASCII
[javac] 1LTI ??? local C5
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:62:
error: unmappable character for encoding ASCII
[javac] 2W6E ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:62:
error: unmappable character for encoding ASCII
[javac] 2W6E ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:62:
error: unmappable character for encoding ASCII
[javac] 2W6E ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:63:
error: unmappable character for encoding ASCII
[javac] 2LXC ??? local C2
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:63:
error: unmappable character for encoding ASCII
[javac] 2LXC ??? local C2
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:63:
error: unmappable character for encoding ASCII
[javac] 2LXC ??? local C2
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:64:
error: unmappable character for encoding ASCII
[javac] 3OE7 ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:64:
error: unmappable character for encoding ASCII
[javac] 3OE7 ??? local C3
[javac] ^
[javac]
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java:64:
error: unmappable character for encoding ASCII
[javac] 3OE7 ??? local C3
[javac] ^
[javac] 15 errors
BUILD FAILED
/tmp/buildd/biojava4-live-4.1.0+dfsg/biojava-structure-gui/build.xml:76:
Compile failed; see the compiler error output for details.
Total time: 6 seconds
debian/rules:32: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 1
make[1]: Leaving directory '/tmp/buildd/biojava4-live-4.1.0+dfsg'
debian/rules:10: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//32080 and its subdirectories
