Package: bedtools Version: 2.29.2+dfsg-4 Severity: serious
The autopkgtests for bedtools are failing on all tested architectures (though they are "not a regression" on i386 and armhf). When I look at the amd64 failure logs, the failures all seem to be missing "../htsutil"
Testing bedtools bamtobed: test-bamtobed.sh: line 22: ../htsutil: No such file or directory Testing bedtools bamtofastq: test-bamtofastq.sh: line 17: ../htsutil: No such file or directory
Testing bedtools bedtobam: bedtobam.t1...test-bedtobam.sh: line 23: ../htsutil: No such file or directory
Testing bedtools coverage: test-coverage.sh: line 22: ../htsutil: No such file or directory Testing bedtools genomecov: test-genomecov.sh: line 22: ../htsutil: No such file or directory
Testing bedtools intersect: intersect.t01...ok intersect.t02...ok intersect.t03...ok intersect.t04...ok intersect.t05...ok intersect.t06...ok intersect.t07...ok intersect.t08...ok intersect.t09...ok intersect.t10...ok intersect.t11...ok intersect.t12...ok intersect.t13...ok intersect.t14...ok intersect.t15...ok intersect.t16...ok test-intersect.sh: line 200: ../htsutil: No such file or directory Testing bedtools multicov: test-multicov.sh: line 17: ../htsutil: No such file or directory