On Sat, Feb 20, 2021 at 05:03:45PM +0100, Filippo Rusconi wrote: > Greetings, Andreas and Michael, > > I hope you are doing fine. > > On Fri, Feb 19, 2021 at 10:19:11PM +0100, Andreas Tille wrote: > > Hi Filippo, > > > > this is extremely unfortunate. However, I guess the alternative would > > have been to keep some RC buggy seqan-dev which would not have helped > > openms as well. I tried the same as Peter and replaced the > > Build-Depends seqan-dev by libseqan2-dev. > > > > I can confirm the observation from Peter about the missing header file. > > I simply tried to comment those missing headers (next one is also > > missing): > > > > > > // #include <seqan/seq_io/guess_stream_format.h> > > // #include <seqan/seq_io/read_fasta_fastq.h> > [...] > > Thank you for your trials and explanations. I am no on vacation, which means > I'll finally find some time to try understand the implications of that SeqAn > upgrade. > > I'll keep you posted with my findings.
The brute force approach works for me: 1. install seqan-dev from buster (for step 2) 2. cp -a /usr/include/seqan debian/ 3. in debian/control remove the seqan-dev build dependency 4. in debian/rules pass -DSEQAN_INCLUDE_DIR=$(DEBIAN_DIR) to dh_auto_configure > Cheers, > > Filippo cu Adrian