Your message dated Mon, 24 May 2010 11:44:22 +0000 with message-id <e1ogw50-0001n0...@ries.debian.org> and subject line Bug#582509: fixed in rpy2 2.1.2-1 has caused the Debian Bug report #582509, regarding rpy2: debian/rules doesn't trap errors inside for loops to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 582509: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=582509 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: python-rpy2 Version: 2.1.1-1 Severity: normal There are no files in /usr/lib/python2.5/site-packages because compilation fails, as checked by apt-get -b source python-rpy2 with following output .... for python in python2.5 python2.6; \ do $python setup.py install --root=debian/python-rpy2; \ done running install running build running build_py running build_ext building 'rpy2.rinterface.rinterface' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DCSTACK_DEFNS=1 -DRIF_HAS_RSIGHAND=1 -Irpy/rinterface -I/usr/include/python2.5 -I/usr/share/R/include -c rpy/rinterface/rinterface.c -o build/temp.linux-x86_64-2.5/rpy/rinterface/rinterface.o -L/usr/lib64/R/lib -lR -llapack -lblas In file included from /usr/include/python2.5/Python.h:8, from rpy/rinterface/rinterface.c:55: /usr/include/python2.5/pyconfig.h:970:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/signal.h:29, from rpy/rinterface/rinterface.c:51: /usr/include/features.h:210:1: warning: this is the location of the previous definition In file included from rpy/rinterface/rinterface.c:74: /usr/share/R/include/R_ext/Rdynload.h:26: warning: function declaration isn’t a prototype In file included from rpy/rinterface/rinterface.c:100: rpy/rinterface/na_values.c: In function ‘NAInteger_tp_new’: rpy/rinterface/na_values.c:179: warning: implicit declaration of function ‘Py_SIZE’ rpy/rinterface/na_values.c:188: error: lvalue required as left operand of assignment In file included from rpy/rinterface/rinterface.c:105: rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’: rpy/rinterface/sequence.c:447: warning: unused variable ‘sexp_item’ rpy/rinterface/sequence.c:447: warning: unused variable ‘tmp’ rpy/rinterface/sequence.c:446: warning: unused variable ‘vs’ rpy/rinterface/sequence.c:386: warning: unused variable ‘self_typeof’ rpy/rinterface/rinterface.c: In function ‘EmbeddedR_end’: rpy/rinterface/rinterface.c:1112: warning: unused variable ‘str’ error: command 'gcc' failed with exit status 1 .... In the following python2.6 modules get compiled without problem into /usr/lib/python2.6/dist-packages/rpy2 Thanks Erwin -- System Information: Debian Release: squeeze/sid APT prefers testing APT policy: (900, 'testing'), (300, 'stable'), (100, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 2.6.32-3-amd64 (SMP w/2 CPU cores) Locale: LANG=de_AT.UTF-8, LC_CTYPE=de_AT.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages python-rpy2 depends on: ii libc6 2.10.2-6 Embedded GNU C Library: Shared lib ii python 2.5.4-9 An interactive high-level object-o ii python-central 0.6.14+nmu2 register and build utility for Pyt ii python-fann [python] 20091015-1 Package created with checkinstall ii python-numpy 1:1.3.0-3+b1 Numerical Python adds a fast array ii r-base-core 2.11.0-1 GNU R core of statistical computat python-rpy2 recommends no packages. Versions of packages python-rpy2 suggests: pn python-rpy-docs <none> (no description available) -- no debconf information
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--- Begin Message ---Source: rpy2 Source-Version: 2.1.2-1 We believe that the bug you reported is fixed in the latest version of rpy2, which is due to be installed in the Debian FTP archive: python-rpy2_2.1.2-1_i386.deb to main/r/rpy2/python-rpy2_2.1.2-1_i386.deb rpy2_2.1.2-1.diff.gz to main/r/rpy2/rpy2_2.1.2-1.diff.gz rpy2_2.1.2-1.dsc to main/r/rpy2/rpy2_2.1.2-1.dsc rpy2_2.1.2.orig.tar.gz to main/r/rpy2/rpy2_2.1.2.orig.tar.gz A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 582...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Dirk Eddelbuettel <e...@debian.org> (supplier of updated rpy2 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Sat, 22 May 2010 10:40:55 -0500 Source: rpy2 Binary: python-rpy2 Architecture: source i386 Version: 2.1.2-1 Distribution: unstable Urgency: low Maintainer: Dirk Eddelbuettel <e...@debian.org> Changed-By: Dirk Eddelbuettel <e...@debian.org> Description: python-rpy2 - Python interface to the GNU R language and environment (version 2 Closes: 582505 582509 Changes: rpy2 (2.1.2-1) unstable; urgency=low . * New upstream release . * debian/rules: For the time being, and on the recommendation from the upstream author, we are suspending python2.5 builds. rpy2 is under active development, but upstream does no longer look at python 2.4 and 2.5 build issues. If this of importance to users, help in debugging the build issues would be appreciated upstream. (Closes: #582505) . * debian/rules: Add 'set -e;' before 'for python...' (Closes: #582509) Checksums-Sha1: 88d6abf8366ff1c6bc041130ef09bf6ee6e08800 1244 rpy2_2.1.2-1.dsc 9acb4d064f893a559b3cb94b8b00e34ba6d297c2 127657 rpy2_2.1.2.orig.tar.gz c5fa8ecba59a4258faa56a9d282eebab574f0b5a 12031 rpy2_2.1.2-1.diff.gz c4004c952074df8685fc8f890fa30c5ed8866040 113178 python-rpy2_2.1.2-1_i386.deb Checksums-Sha256: 986e0ee96eeec132978e1ae025481748e1b8f2a6e9e49be137ea664df484dd27 1244 rpy2_2.1.2-1.dsc 04eeeeb09ef4f581989a0e659dbbccdaf4ee13a97b36593a6912aa0753edcb09 127657 rpy2_2.1.2.orig.tar.gz d1012ffc06dbc46e63db26290e1f25f699cd53154c680470d75ff5bf4f155213 12031 rpy2_2.1.2-1.diff.gz abd3e74c16a8d83affe36009e1861ecc2586c3e4afc3e41aaee86c55f3954035 113178 python-rpy2_2.1.2-1_i386.deb Files: ec516b8983168af68cd7b5b34b789513 1244 python optional rpy2_2.1.2-1.dsc b0d74cedcf05f777bf91f0f08aad015a 127657 python optional rpy2_2.1.2.orig.tar.gz 1d895e426102d8f033ec980b3d65c9bc 12031 python optional rpy2_2.1.2-1.diff.gz 2fb8fbc77457bfbea263569755b00ffc 113178 python optional python-rpy2_2.1.2-1_i386.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) iD8DBQFL+lwaCZSR95Gw07cRAkHoAJ4re2eEBHRhHL6JnD9Zk54DMqkzYgCfYTO1 B9GzC7+2RJhN6diwUWgReYs= =oF80 -----END PGP SIGNATURE-----
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