Source: blasr Version: 5.3+0-2 Severity: serious Justification: FTBFS -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512
Hi, When recompiling blasr for unstable it FTBFS with: make[1]: Leaving directory '/<<PKGBUILDDIR>>' debian/rules override_dh_auto_build make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_build make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<<PKGBUILDDIR>>' make[2]: git: Command not found g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pbseq -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g -DSHA1_7=\"\" -std=c++0x -pedantic -Wall -We xtra -Wno-div-by-zero -Wno-overloaded-virtual -MMD -MP -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -fno-omit-frame-pointer -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pbseq /alignment -I/usr/include/pbseq/hdf -I/usr/include/pbseq/pbdata -I/usr/include -I/usr/include/hdf5/serial -I/usr/include/htslib -I/usr/include/boost -c -o Blasr.o Blasr.cpp In file included from iblasr/BlasrMiscs.hpp:4, from Blasr.cpp:3: iblasr/BlasrHeaders.h:24:10: fatal error: libconfig.h: No such file or directory #include <libconfig.h> ^~~~~~~~~~~~~ compilation terminated. make[2]: *** [<builtin>: Blasr.o] Error 1 Full log attached. Thanks, _g. - -- System Information: Distributor ID: PureOS Description: PureOS GNU/Linux 8 Release: 8 Codename: green Architecture: x86_64 Kernel: Linux 4.14.0-3-amd64 (SMP w/4 CPU cores) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages blasr depends on: ii libc6 2.27-5 ii libgcc1 1:8.2.0-3 ii libhdf5-100 1.10.0-patch1+docs-4+b2 ii libhdf5-cpp-100 1.10.0-patch1+docs-4+b2 pn libhts2 <none> pn libpbbam <none> pn libpbseq <none> ii libstdc++6 8.2.0-3 ii zlib1g 1:1.2.11.dfsg-1 blasr recommends no packages. blasr suggests no packages. -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAlt8Cu8ACgkQ7+hsbH/+ z4OhTQf/bZPsdSP7SzdhPH4n7kRghAx0aH+hiRpMbwIV+KbBKrFglcVV4G6X9LJM eAI2ovx0mk27VKLPjKFA7eYkin5j3JxEvKDrSiqwu4xk7YAtHf/4rfMIJfLs1za2 oXqaWkc7GlKhX834A+0B2kxCOnmOLLETOXAoPzJl0+TFt3Ec5uJbXQSd6QLF0iJO LTm4zx8kl/3KXxQPZUHkQibC/B6G5vDHl2KoXNnAqQHqyDjFrFE5wglu4mUV/u0X 2kVaNezD7+o1HGqLEOTKXFT9rLH13EWoL79/Tcblr66jjJdgn36tFqHggVc74d5v 42+SK5GWyaR5yXNPH27mj1NS/RSF7g== =0mhM -----END PGP SIGNATURE-----
blasr_5.3+0-2_amd64-2018-08-21T11:40:43Z.build.gz
Description: application/gzip