Your message dated Tue, 6 Feb 2024 08:32:55 +0100 with message-id <zchgpqgoxopnm...@an3as.eu> and subject line qiime version 2023.9.2-1 does not show this problem any more has caused the Debian Bug report #1060965, regarding q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1060965: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1060965 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: q2cli Version: 2022.11.1-2 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20240115 ftbfs-trixie Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules binary > dh binary --with python3 --buildsystem=pybuild > dh_update_autotools_config -O--buildsystem=pybuild > dh_autoreconf -O--buildsystem=pybuild > dh_auto_configure -O--buildsystem=pybuild > I: pybuild base:305: python3.11 setup.py config > running config > dh_auto_build -O--buildsystem=pybuild > I: pybuild base:305: /usr/bin/python3 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli > copying q2cli/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli > copying q2cli/_version.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli > copying q2cli/__main__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli > copying q2cli/commands.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli > copying q2cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > copying q2cli/tests/test_mystery_stew.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > copying q2cli/tests/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > copying q2cli/tests/test_cache_cli.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > copying q2cli/tests/test_dev.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > copying q2cli/tests/test_cli.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > copying q2cli/tests/test_core.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > copying q2cli/tests/test_usage.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > copying q2cli/tests/test_tools.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/tests > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core > copying q2cli/core/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core > copying q2cli/core/completion.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core > copying q2cli/core/state.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core > copying q2cli/core/usage.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core > copying q2cli/core/config.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core > copying q2cli/core/cache.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/core > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin > copying q2cli/builtin/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin > copying q2cli/builtin/tools.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin > copying q2cli/builtin/dev.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin > copying q2cli/builtin/info.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/builtin > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click > copying q2cli/click/type.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click > copying q2cli/click/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click > copying q2cli/click/parser.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click > copying q2cli/click/command.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click > copying q2cli/click/option.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/click > running egg_info > creating q2cli.egg-info > writing q2cli.egg-info/PKG-INFO > writing dependency_links to q2cli.egg-info/dependency_links.txt > writing entry points to q2cli.egg-info/entry_points.txt > writing top-level names to q2cli.egg-info/top_level.txt > writing manifest file 'q2cli.egg-info/SOURCES.txt' > reading manifest file 'q2cli.egg-info/SOURCES.txt' > reading manifest template 'MANIFEST.in' > adding license file 'LICENSE' > writing manifest file 'q2cli.egg-info/SOURCES.txt' > UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/_version.py > set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/q2cli/_version.py to > '2022.11.1' > running build_scripts > creating build > creating build/scripts-3.11 > copying bin/tab-qiime -> build/scripts-3.11 > changing mode of build/scripts-3.11/tab-qiime from 644 to 755 > dh_auto_test -O--buildsystem=pybuild > I: pybuild base:305: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; > python3.11 -m pytest --ignore=q2cli/tests/test_usage.py > ============================= test session starts > ============================== > platform linux -- Python 3.11.7, pytest-7.4.4, pluggy-1.3.0 > rootdir: /<<PKGBUILDDIR>> > collected 0 items / 6 errors > > ==================================== ERRORS > ==================================== > _ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_cache_cli.py > __ > q2cli/tests/test_cache_cli.py:15: in <module> > from qiime2 import Artifact > /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module> > __citations__ = tuple(Citations.load('citations.bib', package='qiime2')) > /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load > parser = bp.bparser.BibTexParser() > E AttributeError: module 'bibtexparser' has no attribute 'bparser' > ____ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_cli.py > _____ > q2cli/tests/test_cli.py:18: in <module> > from qiime2 import Artifact, Visualization > /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module> > __citations__ = tuple(Citations.load('citations.bib', package='qiime2')) > /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load > parser = bp.bparser.BibTexParser() > E AttributeError: module 'bibtexparser' has no attribute 'bparser' > ____ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py > ____ > q2cli/tests/test_core.py:16: in <module> > from qiime2 import Artifact > /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module> > __citations__ = tuple(Citations.load('citations.bib', package='qiime2')) > /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load > parser = bp.bparser.BibTexParser() > E AttributeError: module 'bibtexparser' has no attribute 'bparser' > ____ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_dev.py > _____ > q2cli/tests/test_dev.py:16: in <module> > from qiime2 import Artifact > /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module> > __citations__ = tuple(Citations.load('citations.bib', package='qiime2')) > /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load > parser = bp.bparser.BibTexParser() > E AttributeError: module 'bibtexparser' has no attribute 'bparser' > _ ERROR collecting > .pybuild/cpython3_3.11/build/q2cli/tests/test_mystery_stew.py _ > q2cli/tests/test_mystery_stew.py:13: in <module> > from q2cli.core.usage import CLIUsage > q2cli/core/usage.py:14: in <module> > import qiime2.sdk.usage as usage > /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:43: in <module> > import qiime2 > /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module> > __citations__ = tuple(Citations.load('citations.bib', package='qiime2')) > /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load > parser = bp.bparser.BibTexParser() > E AttributeError: module 'bibtexparser' has no attribute 'bparser' > ___ ERROR collecting .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py > ____ > q2cli/tests/test_tools.py:16: in <module> > from qiime2 import Artifact > /usr/lib/python3/dist-packages/qiime2/__init__.py:23: in <module> > __citations__ = tuple(Citations.load('citations.bib', package='qiime2')) > /usr/lib/python3/dist-packages/qiime2/core/cite.py:26: in load > parser = bp.bparser.BibTexParser() > E AttributeError: module 'bibtexparser' has no attribute 'bparser' > =============================== warnings summary > =============================== > ../../../../../../usr/lib/python3/dist-packages/qiime2/core/cite.py:10 > /usr/lib/python3/dist-packages/qiime2/core/cite.py:10: DeprecationWarning: > pkg_resources is deprecated as an API. See > https://setuptools.pypa.io/en/latest/pkg_resources.html > import pkg_resources > > ../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871 > /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: > DeprecationWarning: Deprecated call to > `pkg_resources.declare_namespace('flufl')`. > Implementing implicit namespace packages (as specified in PEP 420) is > preferred to `pkg_resources.declare_namespace`. See > https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages > declare_namespace(pkg) > > -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html > =========================== short test summary info > ============================ > ERROR q2cli/tests/test_cache_cli.py - AttributeError: module 'bibtexparser' > h... > ERROR q2cli/tests/test_cli.py - AttributeError: module 'bibtexparser' has no > ... > ERROR q2cli/tests/test_core.py - AttributeError: module 'bibtexparser' has > no... > ERROR q2cli/tests/test_dev.py - AttributeError: module 'bibtexparser' has no > ... > ERROR q2cli/tests/test_mystery_stew.py - AttributeError: module > 'bibtexparser... > ERROR q2cli/tests/test_tools.py - AttributeError: module 'bibtexparser' has > n... > !!!!!!!!!!!!!!!!!!! Interrupted: 6 errors during collection > !!!!!!!!!!!!!!!!!!!! > ======================== 2 warnings, 6 errors in 1.06s > ========================= > E: pybuild pybuild:391: test: plugin distutils failed with: exit code=2: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m pytest > --ignore=q2cli/tests/test_usage.py > dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 > returned exit code 13 The full build log is available from: http://qa-logs.debian.net/2024/01/15/q2cli_2022.11.1-2_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240115;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240115&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Hi, qiime version 2023.9.2-1 does not show this problem any more thus closing the bug. Kind regards Andreas. -- http://fam-tille.de
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