Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name : proalign Version : 0.5alpha1 Upstream Author : Ari Löytynoja & Michel C. Milinkovitch URL : http://evol-linux1.ulb.ac.be/ueg/ProAlign/ License : (GPL, LGPL, BSD, MIT/X, etc.) Description : Probabilistic multiple alignment program ProAlign performs probabilistic sequence alignments using hidden Markov models (HMM). It includes a graphical interface (GUI) allowing to (i) perform alignments of nucleotide or amino-acid sequences, (ii) view the quality of solutions, (iii) filter the unreliable alignment regions and (iv) export alignments to other softwares. . ProAlign uses a progressive method, such that multiple alignment is created stepwise by performing pairwise alignments in the nodes of a guide tree. Sequences are described with vectors of character probabilities, and each pairwise alignment reconstructs the ancestral (parent) sequence by computing the probabilities of different characters according to an evolutionary model. It has been published in Bioinformatics. 2003 Aug 12;19(12):1505-13. . Homepage: http://evol-linux1.ulb.ac.be/ueg/ProAlign/ -- System Information: Debian Release: testing/unstable APT prefers unstable APT policy: (500, 'unstable'), (500, 'testing') Architecture: powerpc (ppc64) Shell: /bin/sh linked to /bin/bash Kernel: Linux 2.6.16farm Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
