Author: tille Date: 2008-12-08 18:39:07 +0000 (Mon, 08 Dec 2008) New Revision: 2757
Modified: trunk/packages/fastlink/trunk/debian/changelog trunk/packages/fastlink/trunk/debian/control trunk/packages/fastlink/trunk/debian/copyright trunk/packages/fastlink/trunk/debian/lodscore.1 trunk/packages/fastlink/trunk/debian/rules Log: New upstream bugfix release; machine readable copyright format, bugfixes Modified: trunk/packages/fastlink/trunk/debian/changelog =================================================================== --- trunk/packages/fastlink/trunk/debian/changelog 2008-12-07 11:02:57 UTC (rev 2756) +++ trunk/packages/fastlink/trunk/debian/changelog 2008-12-08 18:39:07 UTC (rev 2757) @@ -1,3 +1,15 @@ +fastlink (4.1P-fix95-1) UNRELEASED; urgency=low + + * New upstream bugfix release + * FIXME: Description + * Standards-Version: 3.8.0 (no changes needed) + * Removed explicite versioning from cdbs and debhelper + * Machine readable copyright files + * debian/loadscore.1: s?\.5?1/2? because man treated .5 as control + * + + -- Andreas Tille <[EMAIL PROTECTED]> Mon, 08 Dec 2008 19:35:59 +0100 + fastlink (4.1P-fix94b-2) unstable; urgency=low * Changed the doc-base section according to the new policy. Modified: trunk/packages/fastlink/trunk/debian/control =================================================================== --- trunk/packages/fastlink/trunk/debian/control 2008-12-07 11:02:57 UTC (rev 2756) +++ trunk/packages/fastlink/trunk/debian/control 2008-12-08 18:39:07 UTC (rev 2757) @@ -5,8 +5,8 @@ DM-Upload-Allowed: yes Uploaders: Andreas Tille <[EMAIL PROTECTED]>, Charles Plessy <[EMAIL PROTECTED]> -Build-Depends: cdbs (>= 0.4.23-1.1), debhelper (>= 5), quilt -Standards-Version: 3.7.3 +Build-Depends: cdbs, debhelper, quilt +Standards-Version: 3.8.0 Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/fastlink/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/fastlink/trunk/ Modified: trunk/packages/fastlink/trunk/debian/copyright =================================================================== --- trunk/packages/fastlink/trunk/debian/copyright 2008-12-07 11:02:57 UTC (rev 2756) +++ trunk/packages/fastlink/trunk/debian/copyright 2008-12-08 18:39:07 UTC (rev 2757) @@ -1,14 +1,28 @@ -This package was debianized by Andreas Tille <[EMAIL PROTECTED]> on -Wed, 1 Dec 2004 14:19:29 +0100. +X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat +X-Debianized-By: Andreas Tille <[EMAIL PROTECTED]> +X-Debinized-Date: Wed, 1 Dec 2004 14:19:29 +0100. +X-Source-Downloaded-From: ftp://fastlink.nih.gov/pub/fastlink/fastlink.tar.Z +X-Upstream-Author: Alejandro Schaffer <[EMAIL PROTECTED]> +X-Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html -It was downloaded from ftp://fastlink.nih.gov/pub/fastlink/fastlink.tar.Z -Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html +Files: * +Copyright: (C) 2000-2007 Alejandro Schaffer <[EMAIL PROTECTED]> + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. +X-Comment: On Debian systems, the complete text of the GNU General Public + License can be found in `/usr/share/common-licenses/GPL'. -Upstream Author: Alejandro Schaffer <[EMAIL PROTECTED]> - -Copyright: GPL - -You are free to distribute this software under the terms of -the GNU General Public Licence. -On Debian systems, the complete text of the GNU General Public -Licence can be found in /usr/share/common-licenses/GPL file. +Files: debian/* +Copyright: 2003-2008 Andreas Tille <[EMAIL PROTECTED]> on +License: Same as fastlink itself Modified: trunk/packages/fastlink/trunk/debian/lodscore.1 =================================================================== --- trunk/packages/fastlink/trunk/debian/lodscore.1 2008-12-07 11:02:57 UTC (rev 2756) +++ trunk/packages/fastlink/trunk/debian/lodscore.1 2008-12-08 18:39:07 UTC (rev 2757) @@ -16,7 +16,7 @@ .B Lodscore compares -2log(likelihood) at the locally optimal theta to -2log(likelihood) at a theta that is -.5 in every component (i.e. each locus unlinked to all the rest). +1/2 in every component (i.e. each locus unlinked to all the rest). In LINKAGE ILINK more likelihood function evaluations are done after the last printed iteration line, but these likelihood function evaluations are unnecessary (see paper2.ps from the Modified: trunk/packages/fastlink/trunk/debian/rules =================================================================== --- trunk/packages/fastlink/trunk/debian/rules 2008-12-07 11:02:57 UTC (rev 2756) +++ trunk/packages/fastlink/trunk/debian/rules 2008-12-08 18:39:07 UTC (rev 2757) @@ -14,3 +14,6 @@ install/fastlink:: dh_desktop + +get-orig-source: + sh debian/get-orig-source _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
