This is on Spark 2.0. I see the following on the unit-tests.log when I run
the R/run-tests.sh. This on a single MAC laptop, on the recently rebased
master. R version is 3.3.0.
16/05/19 11:28:13.863 Executor task launch worker-1 ERROR Executor:
Exception in task 0.0 in stage 5186.0 (TID 10370)
1384595 org.apache.spark.SparkException: R computation failed with
1384596
1384597 Execution halted
1384598
1384599 Execution halted
1384600
1384601 Execution halted
1384602 at org.apache.spark.api.r.RRunner.compute(RRunner.scala:107)
1384603 at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:49)
1384604 at
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:318)
1384605 at org.apache.spark.rdd.RDD.iterator(RDD.scala:282)
1384606 at
org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70)
1384607 at org.apache.spark.scheduler.Task.run(Task.scala:85)
1384608 at
org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
1384609 at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
1384610 at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
1384611 at java.lang.Thread.run(Thread.java:745)
1384612 16/05/19 11:28:13.864 Thread-1 INFO ContextHandler: Stopped
o.s.j.s.ServletContextHandler@22f76fa8{/jobs/json,null,UNAVAILABLE}
1384613 16/05/19 11:28:13.869 Thread-1 INFO ContextHandler: Stopped
o.s.j.s.ServletContextHandler@afe0d9f{/jobs,null,UNAVAILABLE}
1384614 16/05/19 11:28:13.869 Thread-1 INFO SparkUI: Stopped Spark web UI
at http://localhost:4040
1384615 16/05/19 11:28:13.871 Executor task launch worker-4 ERROR Executor:
Exception in task 1.0 in stage 5186.0 (TID 10371)
1384616 org.apache.spark.SparkException: R computation failed with
1384617
1384618 Execution halted
1384619
1384620 Execution halted
1384621
1384622 Execution halted
1384623 at org.apache.spark.api.r.RRunner.compute(RRunner.scala:107)
1384624 at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:49)
1384625 at
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:318)
1384626 at org.apache.spark.rdd.RDD.iterator(RDD.scala:282)
1384627 at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.
t org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
1384630 at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
1384631 at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
1384632 at java.lang.Thread.run(Thread.java:745)
1384633 16/05/19 11:28:13.874 nioEventLoopGroup-2-1 INFO DAGScheduler: Job
5183 failed: collect at null:-1, took 0.211674 s
1384634 16/05/19 11:28:13.875 nioEventLoopGroup-2-1 ERROR RBackendHandler:
collect on 26345 failed
1384635 16/05/19 11:28:13.876 Thread-1 INFO DAGScheduler: ResultStage 5186
(collect at null:-1) failed in 0.210 s
1384636 16/05/19 11:28:13.877 Thread-1 ERROR LiveListenerBus:
SparkListenerBus has already stopped! Dropping event
SparkListenerStageCompleted(org.apache.spark.scheduler.StageIn
fo@413da307)
1384637 16/05/19 11:28:13.878 Thread-1 ERROR LiveListenerBus:
SparkListenerBus has already stopped! Dropping event
SparkListenerJobEnd(5183,1463682493877,JobFailed(org.apache.sp
ark.SparkException: Job 5183 cancelled because SparkContext was shut down))
1384638 16/05/19 11:28:13.880 dispatcher-event-loop-1 INFO
MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
1384639 16/05/19 11:28:13.904 Thread-1 INFO MemoryStore: MemoryStore cleared
1384640 16/05/19 11:28:13.904 Thread-1 INFO BlockManager: BlockManager
stopped
1384641 16/05/19 11:28:13.904 Thread-1 INFO BlockManagerMaster:
BlockManagerMaster stopped
1384642 16/05/19 11:28:13.905 dispatcher-event-loop-0 INFO
OutputCommitCoordinator$OutputCommitCoordinatorEndpoint:
OutputCommitCoordinator stopped!
1384643 16/05/19 11:28:13.909 Thread-1 INFO SparkContext: Successfully
stopped SparkContext
1384644 16/05/19 11:28:13.910 Thread-1 INFO ShutdownHookManager: Shutdown
hook called
1384645 16/05/19 11:28:13.911 Thread-1 INFO ShutdownHookManager: Deleting
directory
/private/var/folders/xy/qc35m0y55vq83dsqzg066_c40000gn/T/spark-dfafdddc-fd25-4eb4-bb1d-565915
1c8231
On Thu, May 19, 2016 at 8:46 AM, Xiangrui Meng <men...@gmail.com> wrote:
> Is it on 1.6.x?
>
> On Wed, May 18, 2016, 6:57 PM Sun Rui <sunrise_...@163.com> wrote:
>
>> I saw it, but I can’t see the complete error message on it.
>> I mean the part after “error in invokingJava(…)”
>>
>> On May 19, 2016, at 08:37, Gayathri Murali <gayathri.m.sof...@gmail.com>
>> wrote:
>>
>> There was a screenshot attached to my original email. If you did not get
>> it, attaching here again.
>>
>> On Wed, May 18, 2016 at 5:27 PM, Sun Rui <sunrise_...@163.com> wrote:
>>
>>> It’s wrong behaviour that head(df) outputs no row
>>> Could you send a screenshot displaying whole error message?
>>>
>>> On May 19, 2016, at 08:12, Gayathri Murali <gayathri.m.sof...@gmail.com>
>>> wrote:
>>>
>>> I am trying to run a basic example on Interactive R shell and run into
>>> the following error. Also note that head(df) does not display any rows. Can
>>> someone please help if I am missing something?
>>>
>>> <Screen Shot 2016-05-18 at 5.09.29 PM.png>
>>>
>>> Thanks
>>> Gayathri
>>>
>>> [image: 提示图标] 邮件带有附件预览链接，若您转发或回复此邮件时不希望对方预览附件，建议您手动删除链接。
>>> 共有 *1* 个附件
>>> Screen Shot 2016-05-18 at 5.09.29 PM.png(155K)极速下载
>>> <http://preview.mail.163.com/xdownload?filename=Screen+Shot+2016-05-18+at+5.09.29+PM.png&mid=xtbB0QpumlUL%2BmgE3wAAs4&part=3&sign=de2b9113bb74f7c3ed7f83a1243fb575&time=1463616821&uid=sunrise_win%40163.com>
>>> 在线预览
>>> <http://preview.mail.163.com/preview?mid=xtbB0QpumlUL%2BmgE3wAAs4&part=3&sign=de2b9113bb74f7c3ed7f83a1243fb575&time=1463616821&uid=sunrise_win%40163.com>
>>>
>>>
>>>
>> [image: 提示图标] 邮件带有附件预览链接，若您转发或回复此邮件时不希望对方预览附件，建议您手动删除链接。
>> 共有 *1* 个附件
>> Screen Shot 2016-05-18 at 5.09.29 PM.png(155K)极速下载
>> <http://preview.mail.163.com/xdownload?filename=Screen+Shot+2016-05-18+at+5.09.29+PM.png&mid=1tbiPhRumlXlgWp0SwAAs6&part=3&sign=e0cf0eb619175e79cfa81bad7c1d26c9&time=1463622289&uid=sunrise_win%40163.com>
>> 在线预览
>> <http://preview.mail.163.com/preview?mid=1tbiPhRumlXlgWp0SwAAs6&part=3&sign=e0cf0eb619175e79cfa81bad7c1d26c9&time=1463622289&uid=sunrise_win%40163.com>
>> <Screen Shot 2016-05-18 at 5.09.29 PM.png>
>>
>>
>>
