Hi Sebastien,
It looks if I set EMBOSS_CLUSTALW environment variable to point to
clustalw2 executable, as in the following example, i don't need to
modify the emma.acd file.
export EMBOSS_CLUSTALW=~/esbin/clustalw-2.1/bin/clustalw2
Regards,
Mahmut
I try to use emma (v 6.5.7.0) with clustalw2 (v 2.1) on Linux x86_64.
My environment contains both clustalw and clustalw2, that's why
clustalw2 binary is called clustalw2.
Accordingly I have changed this line in the emma.acd file (before
compilation):
external: "clustalw2"
instead of
external: "clustalw"
When I try to run emma, I get this error message:
Multiple sequence alignment (ClustalW wrapper)
Warning: Cannot find 'clustalw', no ACD external definition found
Error: Failed to open filename '00011120B'
Problem writing out EMBOSS alignment file
Error: File 'msf::00011120B' remove failed, error:2 'No such file or
directory'
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