Dear Jan,
 
> I've run into a weird problem with seqret after downloading the complete
> protein refseq database and indexing that with dbxflat. The problem
> seems to be triggered by a rare condition, so far I've only encountered
> it with accession ZP_10312765:

The problem is in ajax/core/ajfeatwrite.c in function featTagSwissWrapC (so it 
will only affect Swissprot format feature output).
 
Variable j is declared ajulong but should be ajlong (signed, so it can have a 
value of -1 in this case).
 
If you change the line to
 
    ajlong j;
 
and rebuild, that should fix it.
 
I will check the other wrapping functions in case they have a similar problem 
with other inputs.
 
Again, many thanks for finding it.
 
Peter Rice
EMBOSS Team 

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