Dear developpers, dear all,
I installed on my computer EMBOSS version 6.6.0.0 and tried to install
the SwissProt database. I put in emboss.deafults the following :
DB sw [
type: P comment: 'SwissProt'
methodquery: emboss formatquery: swiss
methodall: direct formatall: fasta
directory: /host/4UBUNTU/sequences/swissprot
file: uniprot_sprot.fasta
fields: 'id acc key des org'
]
When I try to access sequences I get :
entret 'sw:*' stdout
Retrieve sequence entries from flatfile databases and files
Error: No access method for database 'sw'
Error: sequence access method '' not found
Error: Unable to read sequence 'sw:*'
Died: entret terminated: Bad value for '-sequence' and no prompt
entret sw:papa1_carpa stdout
Retrieve sequence entries from flatfile databases and files
Error: No access method for database 'sw'
Error: sequence access method '' not found
Error: Unable to read sequence 'sw:papa1_carpa'
Died: entret terminated: Bad value for '-sequence' and no prompt
When I do not try to have 2 different access methods for SwissProt then
it works fine. Yet I remember from the days that I worked for the
Belgian EMBnet Node that it was possible to have 2 different access
method for the same databank (e.g. SRS or app for query and direct for
all). Did you decide to give up the possibility of mixed access methods
or is there a bug ?
Regards
Guy Bottu
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