EMBOSS Community,

I’ve looked at the example application “seqret” and I think I understand it 
well enough.  However, I am more interested in being able to programmatically 
call the “needle” application without a system call.  More specifically, I 
would like to simply use emboss’s NW alignment function *without* writing a 
full application.  I guess another way to ask this is, I have a completely 
different way of gathering command-line user input that doesn’t use Ajax/ACD, 
can I still use emboss for sequence alignment?  That’s the kind of example I 
need.  Any help is appreciated.  Thanks.

_______________________________________________
Jeff Daily
Scientist
DATA INTENSIVE SCIENTIFIC COMPUTING GROUP

Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999, MSIN K7-90
Richland, WA 99352 USA
Tel: 509-372-6548
Fax: 509-372-4720
jeff.da...@pnnl.gov
www.pnnl.gov

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