Hello,
I would like to update a software called "GILDAS" using fink, however, it
seems that there is a problem to compile the package gcc48-4.8.1-1000
(error message attached below). I do not understand why this is happening
since I already have moved the libgmp.a library aside of the
/usr/local/lib/ folder.
I would appreciate any help to solve this issue.
Best regards,
Monica Rodriguez.
________________________________________________
bash-3.2$ fink update gildas
Information about 13361 packages read in 2 seconds.
fink needs help picking an alternative to satisfy a virtual dependency.
The candidates:
(1) setuptools-py27: (obsolete) OBSOLETE: use setuptools-tng-py27 instead
(2) distribute-py27: (obsolete) OBSOLETE: use setuptools-tng-py27 instead
Pick one: [1]
The following package will be installed or updated:
gildas
The following 16 additional packages will be installed:
cairo cairo-shlibs coverage-py27 distribute-py27 gcc48 gcc48-compiler
gcc48-shlibs
gnome-doc-utils gtk-doc libxml2-py27 nose-py27 numpy-py27 python27
python27-shlibs
setuptools-py27 setuptools-tng-py27
The following package might be temporarily removed:
atlas
Do you want to continue? [Y/n]
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-gcc48-4.8.1-1000
/sw/src/fink.build
dpkg-deb: building package `fink-buildlock-gcc48-4.8.1-1000' in
`/sw/src/fink.build/fink-buildlock-gcc48-4.8.1-1000_2014.03.20-11.14.29_darwin-i386.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i
/sw/src/fink.build/fink-buildlock-gcc48-4.8.1-1000_2014.03.20-11.14.29_darwin-i386.deb
Selecting previously deselected package fink-buildlock-gcc48-4.8.1-1000.
(Reading database ... 79614 files and directories currently installed.)
Unpacking fink-buildlock-gcc48-4.8.1-1000 (from
.../fink-buildlock-gcc48-4.8.1-1000_2014.03.20-11.14.29_darwin-i386.deb)
...
Setting up fink-buildlock-gcc48-4.8.1-1000 (2014.03.20-11.14.29) ...
sudo -u fink-bld [ENV] sh -c /tmp/fink.EHNko
env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xf
/sw/src/gcc-4.8.1.tar.bz2
sudo -u fink-bld [ENV] sh -c /tmp/fink.59EDi
cp /sw/src/ecj-4.5.jar .
sudo -u fink-bld [ENV] sh -c /tmp/fink.T2CTm
[ -r /sw/fink/dists/stable/main/finkinfo/10.5-EOL/languages/gcc48.patch ]
sudo -u fink-bld [ENV] sh -c /tmp/fink.TghM0
patch -p1 <
/sw/fink/dists/stable/main/finkinfo/10.5-EOL/languages/gcc48.patch
patching file gcc/config/darwin.h
patching file gcc/testsuite/g++.dg/special/conpr-3.C
patching file libjava/configure
patching file libjava/configure.ac
patching file libquadmath/configure
sudo -u fink-bld [ENV] sh -c /tmp/fink.udLbG
/tmp/fink.z9CFF
#!/bin/bash -ev
set +x
if [ -e /usr/local/lib/libgmp.a ] || [ -e /usr/local/lib/libgmp.dylib ];
then
echo "-----WARNING-----WARNING-----WARNING-----"
echo "You seem to have GMP installed in /usr/local."
echo "This is known to cause gcc48 to fail to build."
echo "Please move aside /usr/local and try again."
echo "-----WARNING-----WARNING-----WARNING-----"
exit 1
fi
set -x
ulimit -s `ulimit -s`
ulimit -s
++ ulimit -s
+ ulimit -s 8192
mv ../ecj-4.5.jar ecj.jar
+ mv ../ecj-4.5.jar ecj.jar
mkdir ../darwin_objdir
+ mkdir ../darwin_objdir
cd ../darwin_objdir
+ cd ../darwin_objdir
if [ "i386" = "powerpc" ]; then
../gcc-4.8.1/configure --prefix=/sw --prefix=/sw/lib/gcc4.8
--mandir=/sw/share/man --infodir=/sw/lib/gcc4.8/info
--enable-languages=c,c++,fortran,lto,objc,obj-c++,java \
--with-gmp=/sw --with-libiconv-prefix=/sw --with-isl=/sw --with-cloog=/sw
--with-mpc=/sw --with-system-zlib --enable-checking=release \
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
--program-suffix=-fsf-4.8 --disable-libjava-multilib
--disable-libquadmath
else
../gcc-4.8.1/configure --prefix=/sw --prefix=/sw/lib/gcc4.8
--mandir=/sw/share/man --infodir=/sw/lib/gcc4.8/info
--enable-languages=c,c++,fortran,lto,objc,obj-c++,java \
--with-gmp=/sw --with-libiconv-prefix=/sw --with-isl=/sw --with-cloog=/sw
--with-mpc=/sw --with-system-zlib --enable-checking=release \
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
--program-suffix=-fsf-4.8
fi
+ '[' i386 = powerpc ']'
+ ../gcc-4.8.1/configure --prefix=/sw --prefix=/sw/lib/gcc4.8
--mandir=/sw/share/man --infodir=/sw/lib/gcc4.8/info
--enable-languages=c,c++,fortran,lto,objc,obj-c++,java --with-gmp=/sw
--with-libiconv-prefix=/sw --with-isl=/sw --with-cloog=/sw --with-mpc=/sw
--with-system-zlib --enable-checking=release
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
--program-suffix=-fsf-4.8
checking build system type... i386-apple-darwin9.8.0
checking host system type... i386-apple-darwin9.8.0
checking target system type... i386-apple-darwin9.8.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln works... yes
checking whether ln -s works... yes
checking for a sed that does not truncate output... /sw//bin/sed
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking for libatomic support... yes
checking for libitm support... yes
checking for libsanitizer support... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether g++ accepts -static-libstdc++ -static-libgcc... no
checking for gnatbind... no
checking for gnatmake... no
checking whether compiler driver understands Ada... no
checking how to compare bootstrapped objects... cmp --ignore-initial=16
$$f1 $$f2
checking for objdir... .libs
checking for the correct version of gmp.h... yes
checking for the correct version of mpfr.h... yes
checking for the correct version of mpc.h... yes
checking for the correct version of the gmp/mpfr/mpc libraries... yes
checking for version 0.10 of ISL... no
checking for version 0.11 of ISL... no
configure: error: Unable to find a usable ISL. See config.log for details.
### execution of /tmp/fink.z9CFF failed, exit code 1
### execution of /tmp/fink.udLbG failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gcc48-4.8.1-1000
(Reading database ... 79615 files and directories currently installed.)
Removing fink-buildlock-gcc48-4.8.1-1000 ...
Failed: phase compiling: gcc48-4.8.1-1000 failed
Before reporting any errors, please run "fink selfupdate" and try again.
If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem. If not, ask on one (not both, please) of
these mailing lists:
The Fink Users List <fink-us...@lists.sourceforge.net>
The Fink Beginners List <fink-beginners@lists.sourceforge.net>,
with a carbon copy to the maintainer:
Jack Howarth <howa...@bromo.med.uc.edu>
Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.
Please try to include the complete error message in your report. This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.
Also include the following system information:
Package manager version: 0.34.10
Distribution version: selfupdate-cvs Thu Mar 20 11:08:14 2014, 10.5, i386
Trees: local/main stable/main stable/crypto unstable/main unstable/crypto
Xcode.app: 3.1.2
Xcode command-line tools: 3.1.2
Max. Fink build jobs: 1
____________________________________________________
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