Update of /cvsroot/fink/dists/10.3/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv8504
Modified Files:
coot.info
Log Message:
coot version upgrade for 10.3
Index: coot.info
===================================================================
RCS file: /cvsroot/fink/dists/10.3/unstable/main/finkinfo/sci/coot.info,v
retrieving revision 1.35
retrieving revision 1.36
diff -u -d -r1.35 -r1.36
--- coot.info 21 Feb 2006 03:42:42 -0000 1.35
+++ coot.info 24 Feb 2006 18:06:33 -0000 1.36
@@ -1,64 +1,152 @@
Package:coot
-Version: 0.0.33
-Revision: 1
-GCC: 3.3
-Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz
-Source-MD5: 22b87da19a1156f281844c84cd9b8375
+Version: 0.1.0-pre-3
+Revision: 5
+GCC: 3.3
+#Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz
+Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz
+Source-MD5: 6cb82b1069c1975ae05c7215e848af27
+SourceDirectory: %n-%v
Source2:
http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz
-Source2-MD5: c7aa4ee8861d7e82df985fe2eb39c289
+Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6
Source3:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
Source3-MD5: c09bb6b5524901cb0fde14589546224e
-BuildDepends: clipper (>= cvs-14-nov-2003-10), glib, gtk+2, glut, gtkglarea,
guile16, guile16-dev, gsl, libglade2, gtk-canvas (>= 0.1.1-20), libart2 (>=
2.3.16-2), libart2-shlibs (>= 2.3.16-2), guile16-net-http, glut, gtk+2-dev,
libgettext3-dev, imlib, libjpeg, libtiff, giflib, libpng3, gnome-libs-dev,
fftw, libiconv-dev
-Depends: clipper(>= cvs-14-nov-2003-10), guile16-shlibs, gtk-canvas (>=
0.1.1-20), gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui,
guile16-goosh (>= 1.3-2), ssmlib, guile16, guile16-net-http
+###############################################################################
+BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16,
guile16-dev, gsl, libglade2, gtk-canvas (>= 0.1.1-20), libart2 (>= 2.3.16-2),
libart2-shlibs (>= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev,
imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24,
python
+#
+Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk,
guile16-www, guile16-gui, guile16-goosh (>= 1.3-2), guile16, guile16-net-http,
freeglut-shlibs, libart2-shlibs (>= 2.3.16-2), coot-shlibs (= %v-%r), python24,
python
+#
BuildDependsOnly: false
NoSetLDFLAGS: true
-DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
+###############################################################################
Description: Crystallographic molecular graphics
DescDetail: <<
-Coot stands for Crystallograhic Object Oriented Toolkit.
-It is a testbest toolkit for (Protein) Crystallography.
-Coot uses professional (and free) widgets (with
-the gui builder glade), mmdb, clipper, and OpenGL, together with a new
-approach to map contouring and importing/creation and other
-(modelling) operations.
+Coot stands for Crystallograhic Object Oriented Toolkit. It is a testbest
+toolkit for (Protein) Crystallography. Coot uses professional (and free)
+widgets (with the gui builder glade), mmdb, clipper, and OpenGL, together
+with a new approach to map contouring and importing/creation and other
+(modelling) operations. The mmdb, clipper, ssm and mccp4 libraries are now
+provided in the ccp4-onlylibs-dev fink package. On-line documentation is
+available from the coot Web site (see below) and is updated regularly.
<<
+###############################################################################
PatchScript: <<
#!/bin/zsh -ef
perl -pi.bak -e 's|use-modules \(goosh\)|use-modules \(goosh goosh\)|g'
scheme/coot-utils.scm
-#
perl -pi.bak -e 's/include <malloc.h>//g' **/*.c
-#
-# Fix configure file lines 10619 and 10626
-#
-perl -pi.bak -e 's|core -lmccp4 \$MMDB_LIBS -lrfftw -lfftw -lz -lm|core
-lmccp4 \$MMDB_LIBS -lsrfftw -lsfftw -lz -lm|g' configure
<<
-ConfigureParams: --with-mmdb-prefix=%p --with-clipper-prefix=%p
--with-glut-prefix=%p --with-gl-prefix=/usr/X11R6 --with-gtkcanvas-prefix=%p
--with-ssmlib-prefix=%p --with-imlib-prefix=%p --with-gtkgl-prefix=%p
--with-glib-prefix=%p --with-gsl-prefix=%p --with-guile
+###############################################################################
+ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4
--with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6
--with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p
--with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile
--with-python
+###############################################################################
CompileScript: <<
#!/bin/zsh -ef
-export LD_LIBRARY_PATH=""
-export DYLD_LIBRARY_PATH=""
-export PATH=%p/share/guile/1.6/scripts/binoverride:$PATH
+source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh
+export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
+export SED=/usr/bin/sed
+export PYTHONPATH=""
+FLIBS="-L%p/lib" \
+CPPFLAGS="-I$CCP4/lib/clipper/clipper/mmdbold" \
+#LDFLAGS="-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace -L%p/lib" \
+LDFLAGS="-L$CLIB -L/usr/lib -flat_namespace -L%p/lib" \
+FC="%p/bin/g77" \
+CXX="/usr/bin/g++-3.3" \
+CC="/usr/bin/gcc" \
+py_path=%p/bin/python \
./configure %c
+#
make
<<
+###############################################################################
InstallScript: <<
#!/bin/zsh -ef
-export LD_LIBRARY_PATH=""
-export DYLD_LIBRARY_PATH=""
+source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh
+export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
+export PYTHONPATH=""
+export SED=/usr/bin/sed
+cp src/coot.py python/coot.py
make install prefix=%i
#
+# Clean up the 120 MB mess, which zsh makes so much fun:
+/bin/rm -f **/*.o
+# enable coot to use its own refmac library:
+#
+perl -pi.bak -e 's|\# COOT_REFMAC_LIB|COOT_REFMAC_LIB|g' setup/coot.sh
+perl -pi.bak -e 's|\# export COOT_REFMAC_LIB_DIR|export COOT_REFMAC_LIB_DIR|g'
setup/coot.sh
+perl -pi.bak -e 's|\# PYTHONPATH|PYTHONPATH|g' setup/coot.sh
+perl -pi.bak -e 's|\# PYTHONPATH|PYTHONPATH|g' setup/coot.csh
+perl -pi.bak -e 's|\# setenv COOT_REFMAC_LIB_DIR|setenv COOT_REFMAC_LIB_DIR|g'
setup/coot.csh
+#
# Add ancillary files to %i/share/coot:
#
mkdir -p %i/share/coot/etc
+mkdir -p %i/share/coot/python
cp -R setup %i/share/coot/.
cp -R ../lib %i/share/coot/.
+# cp %i/share/coot/src/coot.py %i/share/coot/python/.
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
-#
+# 0.1.0 %n (>= 0.1.0-pre-1-1) 0.1.0 %n (>= 0.1.0-pre-1-1)
# Get rid of spurious, wrongly placed directory
rm -rf %i/setup
+# The new wrapper creates problems. Get rid of it.
+/bin/rm -f %i/bin/coot
+cp %i/bin/coot-real %i/bin/coot
+/bin/rm -f %i/bin/coot-real
<<
+###############################################################################
+DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
License: GPL
Maintainer: W. G. Scott <[EMAIL PROTECTED]>
-Homepage: http://www.ysbl.york.ac.uk/~emsley/coot/
+Homepage: http://www.ysbl.york.ac.uk/~emsley/coot/doc/user-manual.html
+###############################################################################
+#
+SplitOff: <<
+Package: %N-shlibs
+Files: <<
+lib/libccp4mg-*.dylib
+lib/libcoot-*.dylib
+<<
+Shlibs: <<
+%p/lib/libccp4mg-surface.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libccp4mg-utils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-analysis.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-AngleInfo.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-atomutils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-cabuild.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-compat.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-coord-extras.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-coord-utils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-coords.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-db-main.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-geometry.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-high-res.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-ideal.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-isosurface.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-ligand.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-map-heavy.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-map-utils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-mini-mol.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-mmtz-extras.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-sequence-view.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-shelx.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-skeleton.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-surface.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-tw.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-utils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-wrap-guile.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+%p/lib/libcoot-wrap-python.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
+<<
+<<
+#
+###############################################################################
+#
+SplitOff2: <<
+Package: %N-dev
+BuildDependsOnly: True
+Files: <<
+include/*
+lib/*.a
+lib/*.la
+<<
+<<
+###############################################################################
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