Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs17.sourceforge.net:/tmp/cvs-serv3368
Modified Files:
coot.info
Log Message:
cleaned up info file and have latest version
Index: coot.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v
retrieving revision 1.86
retrieving revision 1.87
diff -u -d -r1.86 -r1.87
--- coot.info 10 Sep 2008 08:14:02 -0000 1.86
+++ coot.info 10 Sep 2008 15:30:14 -0000 1.87
@@ -1,10 +1,10 @@
Package: coot
-Version: 0.5-pre-1-1382
-Revision: 2
+Version: 0.5-pre-1-1391
+Revision: 1
GCC: 4.0
-Source:
http://www.ysbl.york.ac.uk/~emsley/software/pre-release/coot-0.5-pre-1-revision-1382.tar.gz
+Source:
http://www.ysbl.york.ac.uk/~emsley/software/pre-release/coot-0.5-pre-1-revision-1391.tar.gz
# Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz
-Source-MD5: bf54db93380c1e2d23515fa4ea46cf4f
+Source-MD5: fed9229e285e3ede30f7d3f9798e4d11
SourceDirectory: %n-0.5-pre-1
Source2: http://www.ysbl.york.ac.uk/refmac/data/refmac5.4_dictionary.tar.gz
Source2-MD5: 14b965dc5ab9762c819f632c133998b9
@@ -20,8 +20,9 @@
widgets (with the gui builder glade), mmdb, clipper, and OpenGL, together
with a new approach to map contouring and importing/creation and other
(modelling) operations. The mmdb, clipper, ssm and mccp4 libraries are now
-provided in the ccp4-onlylibs-dev fink package. On-line documentation is
-available from the coot Web site (see below) and is updated regularly.
+provided in separate fink packages that replace the ccp4-onlylibs-dev fink
+package. On-line documentation is available from the coot Web via the help
+menu or via the web site (see below) and is updated regularly.
.
To have an Aqua-like Coot gtk+2 environment, issue the following command:
echo "include \"%p/share/themes/Glossy_P/gtk-2.0/gtkrc\"">~/.gtkrc-2.0
@@ -130,26 +131,15 @@
# Patch: %n.patch
PatchScript: <<
#!/bin/zsh -exf
-if [[ $(sw_vers -productVersion) < 10.5 ]]; then
- :
-else
- :
- # patch -p1 < %a/%n-10.5.patch
-fi
perl -pi.bak -e 's|use-modules \(goosh\)|use-modules \(goosh goosh\)|g'
scheme/coot-utils.scm
-#perl -pi.bak -e 's/include <malloc.h>//g' **/*.c
# Use the correct povray directory
perl -pi.bak -e 's|povray-3.5|povray-3.6|g' scheme/povray.scm
# Use "open" to display the png snapshot in Preview.app (or the user's default
application)
perl -pi.bak -e 's|coot-png-display-program
\"display\"|coot-png-display-program \"open\"|g' scheme/raster3d.scm
# This is required to get the map displayed on both sides of side-by-side
stereo
echo "(set-display-lists-for-maps 0)" >>| scheme/group-settings.scm
-# Fix configure to work with gpp4 library instead of ccp4c
-# perl -pi -e 's|ccp4c|gpp4|g' configure
-#perl -pi.bak -e 's|2.8.0|2.6.0|g' configure
-# perl -pi.bak -e 's|have_glut=no|have_glut=yes|g' configure
+# Hopefully temporary hacks to configure
perl -pi.bak -e 's|have_goosh=no|have_goosh=yes|g' configure
-# perl -pi.bak -e 's|have_guile_gui=no|have_guile_gui=yes|g' configure
perl -pi -e "s|guile-config|guile-1.8-config|g" configure
perl -pi -e 's|\(goosh\)|\(goosh goosh\)|g' configure
perl -pi -e 's|lccp4c|lgpp4|g' configure
@@ -157,19 +147,15 @@
<<
###############################################################################
ConfigureParams: <<
---with-gpp4=%p --with-mmdb=%p \
---with-clipper-prefix=%p \
---with-fftw=%p \
---with-glut-prefix=%p --with-gl-prefix=/usr/X11R6 --with-gtk2 \
---with-gnomecanvas-prefix=%p --with-ssmlib-prefix=%p \
---with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p \
---with-guile-gtk --with-guile-gtk-prefix=%p \
+--with-gpp4=%p --with-mmdb=%p --with-ssmlib-prefix=%p --with-clipper-prefix=%p
\
+--with-fftw=%p --with-gnomecanvas-prefix=%p --with-gtk2 --with-glut-prefix=%p
\
+--with-guile-gtk --with-guile-gtk-prefix=%p --with-gl-prefix=/usr/X11R6
\
+--with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p
\
--with-gsl-prefix=%p --with-guile --with-python
<<
###############################################################################
CompileScript: <<
#!/bin/zsh -efv
-# set -x
export
PATH=%p/bin:%p/share/guile/1.8/scripts/binoverride:$PATH:%p/share/guile/1.8/goosh
export SED=/usr/bin/sed
export GDK_USE_XFT='1'
@@ -184,12 +170,12 @@
DYLD_LIBRARY_PATH="" \
./configure %c
#
+# Force coot to link to single-precision fftw libraries. The double-precision
libraries
+# cause coot to crash.
perl -pi -e 's|lrfftw |lsrfftw |g' **/Makefile
perl -pi -e 's|lfftw |lsfftw |g' **/Makefile
perl -pi -e 's|include <rfftw.h>|include <srfftw.h>|g'
surface/CXXFFTSolventMap.h
#
-# py_path="%p/bin/python2.5" \
-#
#remake the src/coot_wrap_python.cc and src/coot_wrap_guile.cc files
/bin/rm -f **/coot_wrap_**.cc
cd src
@@ -226,7 +212,6 @@
# This installs the refmac monomer library
mkdir -p %i/share/coot/lib/data
cp -R ../dic %i/share/coot/lib/data/monomers
-# cp %i/share/coot/etc/python/coot.py %i/share/coot/python/.
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
@@ -256,34 +241,34 @@
lib/libcootaneer.0*.dylib
<<
Shlibs: <<
- %p/lib/libccp4mg-surface.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libccp4mg-utils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-analysis.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-AngleInfo.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-atomutils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-cabuild.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-compat.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-coord-extras.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-coord-utils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-coords.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-db-main.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-geometry.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-high-res.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-ideal.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-isosurface.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-ligand.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-map-heavy.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-map-utils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-mini-mol.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-sequence-view.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-shelx.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-skeleton.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-surface.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-tw.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-utils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-wrap-guile.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcoot-wrap-python.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
- %p/lib/libcootaneer.0.dylib 1.0.0 %n (>=
0.5-pre-1-1382-1)
+ %p/lib/libccp4mg-surface.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libccp4mg-utils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-analysis.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-AngleInfo.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-atomutils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-cabuild.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-compat.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-coord-extras.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-coord-utils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-coords.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-db-main.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-geometry.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-high-res.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-ideal.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-isosurface.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-ligand.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-map-heavy.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-map-utils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-mini-mol.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-sequence-view.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-shelx.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-skeleton.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-surface.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-tw.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-utils.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-wrap-guile.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcoot-wrap-python.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
+ %p/lib/libcootaneer.0.dylib 1.0.0 %n (>=
0.5-pre-1-1391-1)
<<
DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
<<
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