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On 5/29/11 2:00 PM, Remko Scharroo wrote:
> Dear Alexander,
>
> You have recently uploaded a new hdf5.info file in the unstable tree
> (hdf-1.6.10-3).
>
> Unfortunately it doesn't even get through the configuration stage.
> After a lot of warnings in the autoreconf it fails in the configure command.
>
> Does that do the same on your machine?
No.
I tested it on 10.6/i386, 10.6/x86_64, 10.5/powerpc, and 10.4/powerpc.
I wouldn't have committed the change if the build broke for me on any of
those systems.
> What's the way to fix this?
>
> Find below the output of running "fink update hdf5"
>
> Regards,
> Remko
>
Where you have:
/var/tmp/tmp.1.QQQzOt
#!/bin/sh -ev
export F9X=/sw/bin/gfortran
export FFLAGS='-fsecond-underscore'
export LIBS='-lsz'
/usr/bin/autoreconf -fi
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
/var/tmp/autoconf/autoconf-15~401/SRC/autoconf/lib/autoconf/status.m4:929:
AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
/var/tmp/autoconf/autoconf-15~401/SRC/autoconf/lib/autoconf/status.m4:929:
AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
glibtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `bin'.
glibtoolize: copying file `bin/ltmain.sh'
glibtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.in and
glibtoolize: rerunning libtoolize, to keep the correct libtool macros
in-tree.
glibtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
/var/tmp/autoconf/autoconf-15~401/SRC/autoconf/lib/autoconf/status.m4:929:
AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
/var/tmp/autoconf/autoconf-15~401/SRC/autoconf/lib/autoconf/status.m4:929:
AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
/var/tmp/autoconf/autoconf-15~401/SRC/autoconf/lib/autoconf/status.m4:929:
AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
# export LDFLAGS="$LDFLAGS -Wl,-dead_strip_dylibs"
if [ "x86_64" = "x86_64" ]; then
./configure --prefix=/sw --enable-cxx --without-ssl --with-zlib
- --without-mpe --without-pablo --with-szlib \
- --without-gass --without-srb --without-pthread --enable-fortran
- --disable-parallel --build=x86_64-apple-darwin`uname -r|cut -f1 -d.`
- --host=x86_64-apple-darwin`uname -r|cut -f1 -d.`
else
./configure --prefix=/sw --enable-cxx --without-ssl --with-zlib
- --without-mpe --without-pablo --with-szlib \
- --without-gass --without-srb --without-pthread --enable-fortran
- --disable-parallel
fi
uname -r|cut -f1 -d.
uname -r|cut -f1 -d.
configure: error: cannot run /bin/sh bin/config.sub
### execution of /var/tmp/tmp.1.QQQzOt failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-hdf5-1.6.10-3
(Reading database ... 115976 files and directories currently installed.)
Removing fink-buildlock-hdf5-1.6.10-3 ...
Failed: phase compiling: hdf5-1.6.10-3 failed
I have:
/var/tmp/tmp.1.EJjH7g
#!/bin/sh -ev
export F9X=/sw64/bin/gfortran
export FFLAGS='-fsecond-underscore'
export LIBS='-lsz'
/usr/bin/autoreconf -fi
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
../../lib/autoconf/status.m4:1099: AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
configure.in:1934: warning:
AC_CACHE_VAL(hdf5_mpi_complex_derived_datatype_works, ...): suspicious
cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from...
configure.in:1934: the top level
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
/var/tmp/autoconf/autoconf-15~401/SRC/autoconf/lib/autoconf/status.m4:929:
AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
glibtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `bin'.
glibtoolize: copying file `bin/ltmain.sh'
glibtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.in and
glibtoolize: rerunning glibtoolize, to keep the correct libtool macros
in-tree.
glibtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
../../lib/autoconf/status.m4:1099: AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
configure.in:1934: warning:
AC_CACHE_VAL(hdf5_mpi_complex_derived_datatype_works, ...): suspicious
cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from...
configure.in:1934: the top level
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
/var/tmp/autoconf/autoconf-15~401/SRC/autoconf/lib/autoconf/status.m4:929:
AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
configure.in:260: warning: AC_CONFIG_SUBDIRS: you should use literals
/var/tmp/autoconf/autoconf-15~401/SRC/autoconf/lib/autoconf/status.m4:929:
AC_CONFIG_SUBDIRS is expanded from...
configure.in:260: the top level
# export LDFLAGS="$LDFLAGS -Wl,-dead_strip_dylibs"
if [ "x86_64" = "x86_64" ]; then
./configure --prefix=/sw64 --enable-cxx --without-ssl --with-zlib
- --without-mpe --without-pablo --with-szlib \
- --without-gass --without-srb --without-pthread --enable-fortran
- --disable-parallel --build=x86_64-apple-darwin`uname -r|cut -f1 -d.`
- --host=x86_64-apple-darwin`uname -r|cut -f1 -d.`
else
./configure --prefix=/sw64 --enable-cxx --without-ssl --with-zlib
- --without-mpe --without-pablo --with-szlib \
- --without-gass --without-srb --without-pthread --enable-fortran
- --disable-parallel
fi
uname -r|cut -f1 -d.
uname -r|cut -f1 -d.
checking build system type... x86_64-apple-darwin10
If anything, my autoreconf step is noisier than yours, but proceeds.
I'm not sure what is going on here, so I'm going to go to the fink-devel
list.
- --
Alexander Hansen, Ph.D.
Fink User Liaison
http://finkakh.wordpress.com/
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