Has anyone successfully compiled the phylogenetics package PHASE (Ben Hines, Maintainer) recently? I have scanned the fink archives but see nothing apart from minor updates to the .patch and .info files last year. Below is the output (edited) I get when I try to install it. I am on OS X 10.4.6, PPC.
It looks to me like the files are not found because they are not being sought in the right directory, but I'm not sure how to correct this. The files it complains are absent are present in the right folder, and can be seen in the unpacking stages (shown below). For example, the first 'absent' file, has a path: /sw/src/fink.build/phase-1.1-1/phase-1.1/include/Models/DnaModel.h Any help would be appreciated. Mike Dyall-Smith ____________________________________________________________ ---From the 'fink install phase' command, it downloads OK: The following package will be installed or updated: phase curl -f -L -O http://distfiles.bne.qld.au.finkmirrors.net/phase-1.1.tgz ---Then it unpacks the downloaded package Unpacking fink-buildlock-phase-1.1-1 (from .../fink-buildlock- phase-1.1-1_2006.06.12-21.57.39_darwin-powerpc.deb) ... Setting up fink-buildlock-phase-1.1-1 (2006.06.12-21.57.39) ... gzip -dc /sw/src/phase-1.1.tgz | /sw/bin/tar -xvf - --no-same-owner --no-same-permissions phase-1.1/ phase-1.1/blas/ phase-1.1/blas/Makefile . . . phase-1.1/include/Models/DnaModel.h . phase-1.1/include/Models/MixedPerturbator.h . . . ---Then it patches the makefile OK . phase-1.1/LICENSING phase-1.1/README patch -p1 </sw/fink/dists/unstable/main/finkinfo/sci/phase.patch patching file include/Models/Model.h patching file makefile /var/tmp/tmp.1.y4WwdA + make g++ -funroll-all-loops -O4 -fstrength-reduce -fexpensive- optimizations -I./include -I./include/Models -I./include/Tree -I./ include/Util -I./include/Sequence -o obj/MCMCphase.o -c src/MCMCphase.cc g++ -funroll-all-loops -O4 -fstrength-reduce -fexpensive- optimizations -I./include -I./include/Models -I./include/Tree -I./ include/Util -I./include/Sequence -o obj/Phase.o -c src/Phase.cc g++-3.3 -I/sw/include -c -o src/Models/DnaModel.o src/Models/ DnaModel.cc src/Models/DnaModel.cc:1:29: Models/DnaModel.h: No such file or directory src/Models/DnaModel.cc:7:36: Sequence/SequenceTable.h: No such file or directory src/Models/DnaModel.cc:9:32: Models/Perturbator.h: No such file or directory src/Models/DnaModel.cc:10:31: Util/ModelFactory.h: No such file or directory src/Models/DnaModel.cc:12:37: PatternDesign/Singleton.h: No such file or directory src/Models/DnaModel.cc:13:26: Util/statlib.h: No such file or directory [snip - lots of similar errors] src/Models/DnaModel.cc:599: error: syntax error before `<<' token src/Models/DnaModel.cc:601: error: syntax error before `<<' token src/Models/DnaModel.cc:602: error: syntax error before `.' token make: *** [src/Models/DnaModel.o] Error 1 ### execution of /var/tmp/tmp.1.y4WwdA failed, exit code 2 Removing build lock... /sw/bin/dpkg-lockwait -r fink-buildlock-phase-1.1-1 (Reading database ... 19431 files and directories currently installed.) Removing fink-buildlock-phase-1.1-1 ... Failed: phase compiling: phase-1.1-1 failed ___________________________________________________________________ _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
