Hi,
I'm having a problem building ncbitools on Leopard 10.5.1.
$ fink install ncbitools
Password:
Information about 6408 packages read in 0 seconds.
The following package will be installed or updated:
ncbitools
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-ncbitools-2.2.6-1003
/sw/src/fink.build
dpkg-deb: building package `fink-buildlock-ncbitools-2.2.6-1003' in
`/sw/src/fink.build/fink-buildlock-ncbitools-2.2.6-1003_2008.01.16-23.15.09_darwin-i386.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i
/sw/src/fink.build/fink-buildlock-ncbitools-2.2.6-1003_2008.01.16-23.15.09_darwin-i386.deb
Selecting previously deselected package fink-buildlock-ncbitools-2.2.6-1003.
(Reading database ... 42699 files and directories currently installed.)
Unpacking fink-buildlock-ncbitools-2.2.6-1003 (from
.../fink-buildlock-ncbitools-2.2.6-1003_2008.01.16-23.15.09_darwin-i386.deb)
...
Setting up fink-buildlock-ncbitools-2.2.6-1003 (2008.01.16-23.15.09) ...
gzip -dc /sw/src/ncbitools-2.2.6.tar.gz | /sw/bin/tar -xf -
--no-same-owner --no-same-permissions
cp /sw/src/vector.Z .
patch -p1 </sw/fink/dists/unstable/main/finkinfo/sci/ncbitools.patch
patching file LICENSE
patching file demo.fasta
patching file ncbi/api/salsap.h
patching file ncbi/api/salutil.h
patching file ncbi/corelib/ncbimisc.c
patching file ncbi/corelib/ncbithr.c
patching file ncbi/vibrant/vibwndws.c
perl -pi -e 's/(FSLockRange|FSUnlockRange)/MF_\1/g' `grep -lri lockrange .`
ncbi/make/makedis.csh
platform is darwin
Darwin guest-wireless-207-151-243-112.usc.edu 9.1.0 Darwin Kernel
Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;
root:xnu-1228.0.2~1/RELEASE_I386 i386
make CFLAGS1="-O2 -c -no-cpp-precomp -Wno-long-double -g "
LDFLAGS1="-framework CoreServices -O2 -g" OTHERLIBS="-lc"
SHELL="/bin/sh" LCL="dwn" RAN="ranlib" CC="cc -pipe"
LIB30=libncbicn3d.a LIB28=libvibgif.a LIB4=libvibrant.a
LIB20=libncbidesk.a LIB45=libddvlib.a VIBFLAG="-DWIN_MAC
-I/Developer/Headers/FlatCarbon" VIBLIBS="-framework Carbon -framework
CoreServices" all
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.dwn ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/*.h ../include
mkdir ../include/connect
chmod ug+rw,o+r ../include/connect
rm ../include/ncbi_*.h ../include/connect_export.h
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../ctools/*.c .
mkdir ../include/ctools
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../connect/lbapi/*.c .
./ln-if-absent ../connect/lbapi/*.h ../include
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make: [copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbithr.c
cp -p ncbithr.o ../lib
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbibs.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon wwwutils.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbierr.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbienv.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbifile.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbimain.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbiprop.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbimath.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbimem.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbimisc.c
ncbimisc.c: In function 'Nlm_CtoPstr':
ncbimisc.c:1132: warning: 'C2PStr' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/TextUtils.h:668)
ncbimisc.c: In function 'Nlm_PtoCstr':
ncbimisc.c:1138: warning: 'P2CStr' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/TextUtils.h:692)
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbimsg.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbistr.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbisgml.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbitime.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbilang.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asnbufo.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asndebin.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asnenbin.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asngen.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asnio.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asnlex.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asnlext.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asnout.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asnprint.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asntypes.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asngenob.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon gifgen.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon togif.c
cc -pipe -DNCBI_NOTHREADS_AVAIL -O2 -c -no-cpp-precomp
-Wno-long-double -g -I../include -DWIN_MAC
-I/Developer/Headers/FlatCarbon ncbithrs.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon -DHAVE_STRING_H
-DREGEX_MALLOC regex.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon tsprintf.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbiargs.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon tree.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbisock.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_socket.c
ncbi_socket.c: In function 'LSOCK_Accept':
ncbi_socket.c:1045: warning: pointer targets in passing argument 3 of
'accept' differ in signedness
ncbi_socket.c: In function 's_Connect':
ncbi_socket.c:1245: warning: pointer targets in passing argument 5 of
'getsockopt' differ in signedness
ncbi_socket.c: In function 'SOCK_CreateOnTop':
ncbi_socket.c:1801: warning: pointer targets in passing argument 3 of
'getpeername' differ in signedness
ncbi_socket.c: In function 'DSOCK_RecvMsg':
ncbi_socket.c:2592: warning: pointer targets in passing argument 6 of
'recvfrom' differ in signedness
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon matrix.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbibuf.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_buffer.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_core.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_core_c.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_util.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_priv.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_ansi_ext.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_connection.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_connector.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_connutil.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_file_connector.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_heapmgr.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_http_connector.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_memory_connector.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_lbsmd_stub.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_host_info.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_server_info.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_service.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_service_connector.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_dispd.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_socket_connector.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon urlquery.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon lbapi.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon binary.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon ncbi_sendmail.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon asn_connection.c
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon drwnflpt.c
In file included from drwnflpt.c:3:
FullPath.c: In function 'FSpGetFullPath':
FullPath.c:167: warning: 'PBGetCatInfoSync' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:8697)
FullPath.c:191: warning: 'PBGetCatInfoSync' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:8697)
FullPath.c: In function 'FSpLocationFromFullPath':
FullPath.c:241: warning: 'NewAliasMinimalFromFullPath' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Aliases.h:899)
FullPath.c:245: warning: 'ResolveAlias' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Aliases.h:925)
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon drwnfspc.c
In file included from drwnfspc.c:3:
FSpCompat.c: In function 'FSMakeFSSpecCompat':
FSpCompat.c:254: warning: 'FSMakeFSSpec' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10072)
FSpCompat.c: In function 'FSpOpenDFCompat':
FSpCompat.c:291: warning: 'FSpOpenDF' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10091)
FSpCompat.c: In function 'FSpOpenRFCompat':
FSpCompat.c:320: warning: 'FSpOpenRF' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10110)
FSpCompat.c: In function 'FSpCreateCompat':
FSpCompat.c:375: warning: 'FSpCreate' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10130)
FSpCompat.c: In function 'FSpDirCreateCompat':
FSpCompat.c:421: warning: 'FSpDirCreate' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10149)
FSpCompat.c: In function 'FSpDeleteCompat':
FSpCompat.c:443: warning: 'FSpDelete' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10165)
FSpCompat.c: In function 'FSpGetFInfoCompat':
FSpCompat.c:470: warning: 'FSpGetFInfo' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10183)
FSpCompat.c: In function 'FSpSetFInfoCompat':
FSpCompat.c:502: warning: 'FSpSetFInfo' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10201)
FSpCompat.c: In function 'FSpSetFLockCompat':
FSpCompat.c:524: warning: 'FSpSetFLock' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10217)
FSpCompat.c: In function 'FSpRstFLockCompat':
FSpCompat.c:546: warning: 'FSpRstFLock' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10233)
FSpCompat.c: In function 'FSpRenameCompat':
FSpCompat.c:570: warning: 'FSpRename' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10251)
FSpCompat.c: In function 'FSpCatMoveCompat':
FSpCompat.c:598: warning: 'FSpCatMove' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10269)
FSpCompat.c: In function 'FSpExchangeFilesCompat':
FSpCompat.c:863: warning: 'FSpExchangeFiles' is deprecated (declared
at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:10287)
FSpCompat.c: In function 'FSpOpenResFileCompat':
FSpCompat.c:886: warning: 'FSpOpenResFile' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Resources.h:1233)
FSpCompat.c: In function 'FSpCreateResFileCompat':
FSpCompat.c:941: warning: 'FSpCreateResFile' is deprecated (declared
at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Resources.h:1253)
cc -pipe -O2 -c -no-cpp-precomp -Wno-long-double -g -I../include
-DWIN_MAC -I/Developer/Headers/FlatCarbon drwnmfls.c
In file included from MoreFilesX.c:59,
from drwnmfls.c:3:
../include/MoreFilesX.h:1467: error: conflicting types for 'FSVolumeMount'
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7299:
error: previous declaration of 'FSVolumeMount' was here
In file included from drwnmfls.c:3:
MoreFilesX.c: In function 'FSGetVolParms':
MoreFilesX.c:219: warning: 'PBHGetVolParmsSync' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7607)
MoreFilesX.c: In function 'FSMakeFSRef':
MoreFilesX.c:425: warning: 'PBMakeFSRefSync' is deprecated (declared
at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7492)
MoreFilesX.c: In function 'UnicodeNameGetHFSName':
MoreFilesX.c:531: warning: 'GetScriptManagerVariable' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Script.h:993)
MoreFilesX.c:532: warning: 'GetScriptManagerVariable' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Script.h:993)
MoreFilesX.c: In function 'HFSNameGetUnicodeName':
MoreFilesX.c:608: warning: 'GetScriptManagerVariable' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Script.h:993)
MoreFilesX.c:609: warning: 'GetScriptManagerVariable' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Script.h:993)
MoreFilesX.c: In function 'FSBumpDate':
MoreFilesX.c:1003: warning: 'GetUTCDateTime' is deprecated (declared
at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/UTCUtils.h:181)
MoreFilesX.c: In function 'FSMoveRenameObjectUnicode':
MoreFilesX.c:1396: warning: 'NumToString' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/NumberFormatting.h:170)
MoreFilesX.c:1401: warning: 'DirCreate' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:9303)
MoreFilesX.c:1427: warning: 'HDelete' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:9322)
MoreFilesX.c:1457: warning: 'HDelete' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:9322)
MoreFilesX.c: In function 'MF_FSLockRange':
MoreFilesX.c:2149: warning: 'PBLockRangeSync' is deprecated (declared
at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:8484)
MoreFilesX.c: In function 'MF_FSUnlockRange':
MoreFilesX.c:2172: warning: 'PBUnlockRangeSync' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:8516)
MoreFilesX.c: In function 'FSGetDirAccess':
MoreFilesX.c:2201: warning: 'PBHGetDirAccessSync' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7786)
MoreFilesX.c: In function 'FSSetDirAccess':
MoreFilesX.c:2257: warning: 'PBHSetDirAccessSync' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7816)
MoreFilesX.c: In function 'FSGetVolMountInfoSize':
MoreFilesX.c:2282: warning: 'PBGetVolMountInfoSize' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7638)
MoreFilesX.c: In function 'FSGetVolMountInfo':
MoreFilesX.c:2307: warning: 'PBGetVolMountInfo' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7653)
MoreFilesX.c: At top level:
MoreFilesX.c:2322: error: conflicting types for 'FSVolumeMount'
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7299:
error: previous declaration of 'FSVolumeMount' was here
MoreFilesX.c: In function 'FSVolumeMount':
MoreFilesX.c:2330: warning: 'PBVolumeMount' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7665)
MoreFilesX.c: In function 'FSMapID':
MoreFilesX.c:2362: warning: 'PBHMapIDSync' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7846)
MoreFilesX.c: In function 'FSMapName':
MoreFilesX.c:2390: warning: 'PBHMapNameSync' is deprecated (declared
at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7876)
MoreFilesX.c: In function 'FSCopyFile':
MoreFilesX.c:2454: warning: 'PBHCopyFileSync' is deprecated (declared
at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7906)
MoreFilesX.c: In function 'FSMoveRename':
MoreFilesX.c:2526: warning: 'PBHMoveRenameSync' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:9489)
MoreFilesX.c: In function 'FSResolveFileIDRef':
MoreFilesX.c:2569: warning: 'PBResolveFileIDRefSync' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7966)
MoreFilesX.c: In function 'FSCreateFileIDRef':
MoreFilesX.c:2605: warning: 'PBCreateFileIDRefSync' is deprecated
(declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:7936)
MoreFilesX.c: In function 'GetTempBuffer':
MoreFilesX.c:2659: warning: 'FreeMem' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:1041)
MoreFilesX.c:2661: warning: 'MaxBlock' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:628)
MoreFilesX.c: In function 'FSSetDefault':
MoreFilesX.c:2727: warning: 'HGetVol' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:9181)
MoreFilesX.c:2735: warning: 'HSetVol' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:8303)
MoreFilesX.c: In function 'FSRestoreDefault':
MoreFilesX.c:2771: warning: 'HSetVol' is deprecated (declared at
/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:8303)
make: *** [drwnmfls.o] Error 1
Fatal error building NCBI core libraries.
Please be sure that you have X11 and Motif libraries installed.
The NCBI toolkit FAQ at ftp://ncbi.nlm.nih.gov/toolbox/FAQ.html may be helpful.
### execution of ncbi/make/makedis.csh failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-ncbitools-2.2.6-1003
(Reading database ... 42700 files and directories currently installed.)
Removing fink-buildlock-ncbitools-2.2.6-1003 ...
Failed: phase compiling: ncbitools-2.2.6-1003 failed
I manually downloaded the latest ncbitools source code from the NCBI
website and was able to compile and build it without any problems.
Thanks,
John
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