Since it seems that the only dynamic stuff is in PHP and fossil,
I suggest using Apache mod_php and mod_cgi (contrary to Warren's
suggestion), as I think the configuration will be easier.

If that is an option, you can copy my configuration. I have a file in my
web root called "scm" that says this:

  #!/usr/bin/env fossil
  directory: /home/protected/r
  repolist

That file is marked as a CGI script, as in this template that generates
the htaccess file.
https://thomaslevine.com/scm/dadaportal/artifact?ln=6..8&name=ddbddcaaac7287d8

The repositories are in /home/protected/r.

It corresponds to this web page.
https://thomaslevine.com/scm

You would of course have to switch the rest of your configuration to
Apache, but that might be very easy.
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