My apologies, how can I visualize mri_binarize output. I tried in fslview but orientation is wrong. Different orientation is a file's feature or swapdim is request? Thanks,
Stefano ----Messaggio originale---- Da: fis...@nmr.mgh.harvard.edu Data: 29-apr-2014 16.01 A: <std...@virgilio.it>, "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] thalami mask (nii.gz) to import in FSL Hi Stefano you can use either mri_binarize --match or mri_extract_label with labels 10 and 49 (which I got from FreeSurferColorLUT.txt) cheers Bruce On Tue, 29 Apr 2014, std...@virgilio.it wrote: > Hi list, > I'd like obtain FS thalami mask (nii.gz) to import in FSL and use it as seed > mask in probtrackx. > > Thanks, > > > Stefano > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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