Francesca, How was lh.EKppa.annot created? Is it a custom list of annotations? Does it include an embedded colortable appropriate for those annotations?
Can you send me the files 'lh.EKppa.annot' and 'lh.white'? I can try to replicate the problem. Also, can you run this: mris_info lh.EKppa.annot you should get a dump of the colortable, similar to this custom annot: reading colortable from annotation file... colortable with 15 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_BA.txt) 0 unknown 25 5 25 0 1 BA1_exvivo 0 92 23 0 2 BA2_exvivo 131 148 255 0 3 BA3a_exvivo 0 0 255 0 4 BA3b_exvivo 255 102 51 0 5 BA4a_exvivo 196 255 20 0 6 BA4p_exvivo 255 51 204 0 7 BA6_exvivo 1 38 153 0 8 BA44_exvivo 153 0 38 0 9 BA45_exvivo 115 153 0 0 10 V1_exvivo 153 15 0 0 11 V2_exvivo 0 214 129 0 12 MT_exvivo 155 0 153 0 13 perirhinal_exvivo 33 150 250 0 14 entorhinal_exvivo 150 33 250 0 Nick On Thu, 2015-04-30 at 14:17 +0300, Francesca Strappini wrote: > Hi, sorry to bother, I'm re-posting this question just in case it got > lost. Thanks. > > Hi, > > I have a question about mris_convert. I've created some regions on the > surface and now I would like to make them directly readable into SUMA. I > ran this command but it ended with an error message. > mris_convert --annot lh.EKppa.annot > /usr/local/freesurfer/subjects/EK/surf/lh.white lh.EKppa.annot.gii > > reading colortable from annotation file... > colortable with 14176 entries read (originally > /usr/local/freesurfer/FreeSurferColorLUT.txt) > Segmentation fault (core dumped) > > I'm using freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 running on > Ubuntu 14.04.2 LTS. > > Thanks in advance for the help! > > Best > Francesca > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
