External Email - Use Caution Dear Frank,
if you search the log in your Dropbox for 'error', this comes up: ---- ERROR! FOV=284.000 > 256 Include the flag -cw256 with recon-all! Inspect orig.mgz to ensure the head is fully visible. ---- Did you have a look at the orig.mgz? Best, Tim > On March 4, 2020 at 2:59 PM Frank Chau <cyfr...@hku.hk> wrote: > > > External Email - Use Caution > > Hello FreeSurfer Developers, > > I ran a recon-all on a recent batch of T1 Nifti files and all ended with > "exited with ERRORS". For example: "recon-all -s Chan_Pui_Kim_42M_T1 exited > with ERRORS at Sat Jan 11 01:32:55 HKT 2020". > > I've searched the email archive list and I found other researcher encountered > same problem before. However, I am quite sure their root causes are not same > as my case. 3 possible causes were found in the email archive which about > "exited with ERRORS": > > 1. The version of freesurfer (I have already used the latest 6.0.0 version) > 2. Hard disk space (My computer have enough hard disk space) > 3. sharing folder between virtual machine and original platform. (I use > freesurfer in Mac OS which do not have this problem) > > I uploaded the recon-all.log to my dropbox in case it's of any use. > > > 1) FreeSurfer version: Darwin-OSX-stable-pub-v6.0.0-2beb96c > > 2) Platform: MAC OS X 10.11.6 > > 3) uname -a: Darwin PFCs-MacBook-Pro.local 15.6.0 Darwin Kernel Version > 15.6.0: Thu Jun 21 20:07:40 PDT 2018; root:xnu-3248.73.11~1/RELEASE_X86_64 > x86_64 > > 4) recon-all.log, please download at: > > https://www.dropbox.com/s/bxb2vyhz3koo83s/recon-all.log-%20Terminal%20Output%20log%2020%20Jan%202020%20.txt?dl=0 > > > > Regards > > Frank > > --------------------------- > > FRANK C Y CHAU > > > > Research assistant > > Division of Neurology > > Department of Medicine > > > > Tel: +852 6340 2553 > > Fax: 2872 5828 > > > > E-mail : cyfr...@hku.hk<mailto:cyfr...@hku.hk> > > > > > > Rm 304, 3/F, New Clinical building, Queen Mary Hospital, 102 Pokfulam Road, > Hong Kong > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
