Use mri_label2vol to map the segmentation into the fMRI space, then use
mri_segstats using the --avgwf option to get time courses. Run it with --help
to get examples
On 11/26/2020 9:16 AM, Francesca Strappini wrote:
External Email - Use Caution
Dear FreeSurfer experts,
I'm trying to use the monkey atlas D99. First, I registered the segmentation
atlas to the monkey anatomy through bbregister. Now, I need to resample the
segmentation to the functional data and extract the mean value from each
functional run using the ROIs contained in the segmentation as masks. I suppose
I should mri_segstats but I'm not sure how. Any suggestion?
Thank you
Francesca
--
Francesca Strappini, Ph.D.
Neurobiology Department
Weizmann Institute of Science
234 Herzl Street, Rehovot 7610001 Israel
Tel.: +972 58 444 2584
E-mail:
francesca.strapp...@weizmann.ac.il<mailto:francesca.strapp...@weizmann.ac.il>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
