You need the patch. See the docs here
https://surfer.nmr.mgh.harvard.edu/fswiki/FsPalm under Setting Up
On 12/16/2020 2:02 PM, Marina Fernández wrote:
External Email - Use Caution
Dear experts,
When I was running permutations with fspalm an error appeared because it
couldn't find the --sig2p-max option when using mri_surfcluster internally.
You can find below the terminal output.
How can I fix this error?
Thank you in advance
Marina.
*Terminal output:
...
>> >> palm processing complete - running the surface cluster analysis...
/usr/local/freesurfer/subjects/merchi182_thickness_stats/stats/thickness/permutation/lctx/across/across_age_cov_none_0.05/pos/lh.fsgd_subj_gauss003/palm
mri_surfcluster --in fsp_clustere_tstat_fwep.mgz --thmin 1.301030 --subject
merchi182_thickness_average --hemi lh --annot aparc --sum
contrast.clustertable.summary --no-fixmni --surf white --ocn contrast.ocn.mgz
--oannot ./contrast.ocn.annot --sig2p-max
ERROR: Option --sig2p-max unknown
error: mri_surfcluster failed
fspalm --glmdir
/usr/local/freesurfer/subjects/merchi182_thickness_stats//stats/thickness/permutation/lctx/across//across_age_cov_none_0.05/pos//lh.fsgd_subj_gauss003
--cft 1.301 --name palm --iters 100 --cwp .05 --onetail: Signal 127
ans =
255
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