The log files in ~/subject4/scripts reveal no error messages. the ?h.sphere's ran without a problem. This is the exact message I get during the four part sphere process: [register RH to target -- in progress] ~/subject4/rh.sphere exists -- use it or redo/overwrite. I did not do any cortical flattening-I don't know why that would impact this but ..? As I mentioned before, I am using the Linux binary.
Brian ----- Original Message ----- From: "Bruce Fischl" <[EMAIL PROTECTED]> To: "freesurfer" <[EMAIL PROTECTED]> Sent: Wednesday, October 10, 2001 5:38 AM Subject: Re: sphere registration error > do the log files report any error? > > Bruce > > -------------------------------------------------------- > Bruce Fischl email: [EMAIL PROTECTED] > Mass. General Hosp. NMR Center. tel:(617)-726-4897 > Rm. 2328, Building 149, 13th Street fax:(617)-726-7422 > Charlestown, MA 02129 USA > > > > On Wed, 10 Oct 2001, Brian C. Schweinsburg wrote: > > > Hi all, > > After running through some of the first processing steps (manual editing, fix topology,etc.), I had some trouble. I started sphere surface, and it ran through the rh and lh without a problem. However, the next two steps are spherical registration for each hemisphere, and this did not work. While displaying the "in progress" message for the rh registration, it asked me if I wanted to overwrite rh.sphere. It seems the registration should create a file called ?h.sphere.reg, but mine does not. I tried it twice on two different machines, both Linux, and got the same overwrite message. One time I let it overwrite, rh.sphere and the end result looked the same as the first spherical transformation. > > > > Am I doing something wrong? Is there a fix for the GUI? Can you run the registration from the command line? > > > > Thanks, > > Brian > > _______________________ > > Brian C. Schweinsburg > > University of California, San Diego > > San Diego State University > > Office: (858) 642-3736 > > Pager: (619) 290-2659 > > Fax: (858) 552-7432 > > http://mednmr3.ucsd.edu/brian/home.htm > > _______________________ > > > > > > > >
